Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7954

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85721 to 88276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88821 to 92965 16322 mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93400 to 95869 16323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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87,867 - 16321 mRNA_7953 0.84 -3.2
87,958 - 16321 mRNA_7953 0.88 0.4
88,107 + -1.2
88,246 - -1.0
88,266 - 0.0
88,389 + -2.1
88,443 - 1.0
88,450 + -0.3
88,471 - -0.0
88,501 + -0.1
88,568 - 0.0
88,591 + -1.7
88,592 + -0.2
88,593 - -0.9
88,593 - 0.0
88,605 + 0.5
88,625 + -0.7
88,639 + -0.9
88,705 - -1.5
88,712 + -2.3
88,781 + -1.9
88,873 + -0.7
88,878 + 0.5
88,880 - -1.3
88,896 + -0.1
88,929 + -1.6
88,930 + -2.3
89,003 + -0.0
89,013 + 1.0
89,040 + 0.8
89,180 - -0.5
89,197 - -2.0
89,558 + 16322 mRNA_7954 0.18 -1.5
89,664 + 16322 mRNA_7954 0.20 -0.0
89,790 + 16322 mRNA_7954 0.23 0.6
89,921 + 16322 mRNA_7954 0.27 -1.6
90,027 - 16322 mRNA_7954 0.29 -1.6
90,250 - 16322 mRNA_7954 0.34 -1.5
90,617 + 16322 mRNA_7954 0.43 0.4
90,784 + 16322 mRNA_7954 0.47 0.4
90,960 - 16322 mRNA_7954 0.52 0.9
90,964 + 16322 mRNA_7954 0.52 -1.1
91,083 + 16322 mRNA_7954 0.55 -0.3
91,210 - 16322 mRNA_7954 0.58 1.5
91,228 + 16322 mRNA_7954 0.58 -1.3
91,317 - 16322 mRNA_7954 0.60 0.1
91,651 + 16322 mRNA_7954 0.68 1.0
91,672 + 16322 mRNA_7954 0.69 0.6
91,988 + 16322 mRNA_7954 0.76 -1.0
92,096 - 16322 mRNA_7954 0.79 -1.2
92,142 - 16322 mRNA_7954 0.80 1.4
92,215 - 16322 mRNA_7954 0.82 1.1
92,246 + 16322 mRNA_7954 0.83 -0.0
92,797 + -2.3
92,979 - -0.4
93,326 + 0.1
93,335 - 0.8
93,338 + 0.8
93,342 - -0.2
93,347 + -2.2
93,348 - 0.2
93,349 + 0.4
93,349 + -1.3
93,524 - -0.4
93,893 - 16323 mRNA_7955 0.20 2.3
93,956 - 16323 mRNA_7955 0.23 0.7