Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7740

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962010 to 966625 16107 mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966858 to 968054 16108 mRNA_7741: 16109 - Hypothetical Protein, at 968367 to 969216 16109

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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965,935 - 16107 mRNA_7739 0.85 -0.3
966,019 + 16107 mRNA_7739 0.87 -1.9
966,040 - 16107 mRNA_7739 0.87 0.3
966,048 + 16107 mRNA_7739 0.87 -0.8
966,106 - 16107 mRNA_7739 0.89 -1.0
966,150 - 16107 mRNA_7739 0.90 -3.7
966,156 + 16107 mRNA_7739 0.90 -3.7
966,204 - 1.2
966,204 - 0.7
966,220 + -2.7
966,242 - 0.3
966,246 + 0.1
966,350 + -3.1
966,400 - -0.6
966,510 + -0.9
966,759 + -0.1
966,763 + -1.9
966,768 + -0.9
966,935 - 0.1
966,949 - -0.6
966,997 + 16108 mRNA_7740 0.12 -0.5
966,997 + 16108 mRNA_7740 0.12 0.6
966,997 + 16108 mRNA_7740 0.12 0.0
966,997 + 16108 mRNA_7740 0.12 -1.6
967,114 - 16108 mRNA_7740 0.21 1.8
967,193 - 16108 mRNA_7740 0.28 0.0
967,215 + 16108 mRNA_7740 0.30 1.6
967,288 + 16108 mRNA_7740 0.36 -0.3
967,639 - 16108 mRNA_7740 0.65 -0.8
967,850 + 16108 mRNA_7740 0.83 1.3
967,850 + 16108 mRNA_7740 0.83 0.0
968,111 - 0.7
968,113 - -2.0
968,308 + -0.4
968,312 - 1.4
968,314 - 0.5
968,769 - 16109 mRNA_7741 0.47 -1.4
968,904 + 16109 mRNA_7741 0.63 -0.6
968,923 + 16109 mRNA_7741 0.65 -3.1