Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7719

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7718: 16086 - K08516 YKT6 synaptobrevin homolog YKT6, at 920015 to 921107 16086 mRNA_7719: 16087 - Hypothetical Protein, at 921427 to 923879 16087 mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923963 to 925405 16088

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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921,156 + -1.1
921,161 + 0.6
921,163 - -0.9
921,188 + -1.0
921,317 - -0.7
921,361 - -0.2
921,441 - -0.4
921,463 + -0.1
921,484 + 2.2
921,615 + 1.3
921,713 + 16087 mRNA_7719 0.12 0.5
921,754 + 16087 mRNA_7719 0.13 -0.6
921,924 + 16087 mRNA_7719 0.20 -0.9
921,934 - 16087 mRNA_7719 0.21 0.6
921,943 - 16087 mRNA_7719 0.21 -0.2
922,069 + 16087 mRNA_7719 0.26 0.8
922,086 + 16087 mRNA_7719 0.27 0.0
922,199 - 16087 mRNA_7719 0.31 1.3
922,208 + 16087 mRNA_7719 0.32 0.7
922,221 - 16087 mRNA_7719 0.32 0.9
922,242 + 16087 mRNA_7719 0.33 -1.9
922,358 + 16087 mRNA_7719 0.38 -0.0
922,499 - 16087 mRNA_7719 0.44 -0.5
922,504 + 16087 mRNA_7719 0.44 0.7
922,622 - 16087 mRNA_7719 0.49 1.5
922,759 + 16087 mRNA_7719 0.54 1.3
922,771 + 16087 mRNA_7719 0.55 1.4
922,773 - 16087 mRNA_7719 0.55 -1.2
922,796 - 16087 mRNA_7719 0.56 0.1
922,802 + 16087 mRNA_7719 0.56 0.3
922,975 + 16087 mRNA_7719 0.63 2.1
923,540 - 16087 mRNA_7719 0.86 1.7
923,541 + 16087 mRNA_7719 0.86 1.1
923,544 - 16087 mRNA_7719 0.86 0.2
923,551 - 16087 mRNA_7719 0.87 1.6
923,554 + 16087 mRNA_7719 0.87 0.2
923,821 - -0.6
923,832 + 0.3
923,864 + 2.7
923,980 + -2.2
924,382 - 16088 mRNA_7720 0.29 -1.3
924,393 - 16088 mRNA_7720 0.30 -0.6
924,571 + 16088 mRNA_7720 0.42 -1.5
924,668 - 16088 mRNA_7720 0.49 1.1
924,678 + 16088 mRNA_7720 0.50 1.0
924,716 - 16088 mRNA_7720 0.52 0.8
924,846 - 16088 mRNA_7720 0.61 -0.3
924,869 - 16088 mRNA_7720 0.63 1.2