Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7703

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880758 to 882745 16070 mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883081 to 887724 16071 mRNA_7704: 16072 - K02214 CDC7 cell division control protein 7, at 888011 to 890440 16072

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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882,144 + 16070 mRNA_7702 0.70 -1.3
882,226 + 16070 mRNA_7702 0.74 1.3
882,439 + 16070 mRNA_7702 0.85 0.1
882,700 + -0.1
882,894 + -1.2
882,992 - 1.5
882,997 - -0.7
883,017 - 2.3
885,485 - 16071 mRNA_7703 0.52 -0.3
885,538 + 16071 mRNA_7703 0.53 -0.4
885,761 - 16071 mRNA_7703 0.58 -2.3
885,937 - 16071 mRNA_7703 0.61 -0.3
886,059 + 16071 mRNA_7703 0.64 -1.6
886,158 - 16071 mRNA_7703 0.66 0.2
886,303 - 16071 mRNA_7703 0.69 -0.6
886,318 - 16071 mRNA_7703 0.70 -1.6
886,319 - 16071 mRNA_7703 0.70 -0.9
886,457 - 16071 mRNA_7703 0.73 -0.0
886,463 - 16071 mRNA_7703 0.73 -1.4
886,949 - 16071 mRNA_7703 0.83 -1.0
887,354 - 1.0
887,683 + 0.7
887,696 + 1.5
887,947 - -0.4
887,950 - 1.1
887,957 - 0.1
887,959 + 0.2
887,959 + -3.0