Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7690

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844796 to 845727 16057 mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846247 to 848747 16058 mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849187 to 849939 16059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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845,281 + 16057 mRNA_7689 0.52 1.1
845,370 - 16057 mRNA_7689 0.62 1.3
845,373 - 16057 mRNA_7689 0.62 -0.8
845,510 - 16057 mRNA_7689 0.77 1.5
845,586 + 16057 mRNA_7689 0.85 -1.9
845,696 + -0.1
845,704 + 1.9
845,713 - -0.7
845,728 + -0.2
845,826 + -0.9
845,864 + 1.1
845,871 - -0.0
845,878 + -0.1
845,966 - 0.7
845,997 + -0.2
845,998 - 0.1
846,005 - -1.0
846,020 + 0.8
846,038 - -0.9
846,299 + -0.0
846,386 - 2.3
846,498 - 16058 mRNA_7690 0.10 0.1
846,666 - 16058 mRNA_7690 0.17 -1.2
846,677 + 16058 mRNA_7690 0.17 1.0
846,854 - 16058 mRNA_7690 0.24 0.7
846,854 - 16058 mRNA_7690 0.24 -1.3
846,854 - 16058 mRNA_7690 0.24 1.1
846,870 + 16058 mRNA_7690 0.25 1.0
846,873 + 16058 mRNA_7690 0.25 1.3
847,023 + 16058 mRNA_7690 0.31 -1.0
847,177 + 16058 mRNA_7690 0.37 1.1
847,183 + 16058 mRNA_7690 0.37 0.1
847,331 + 16058 mRNA_7690 0.43 0.3
847,641 - 16058 mRNA_7690 0.56 0.5
847,747 - 16058 mRNA_7690 0.60 0.2
847,755 - 16058 mRNA_7690 0.60 -0.9
847,811 + 16058 mRNA_7690 0.63 -1.2
847,899 + 16058 mRNA_7690 0.66 0.7
847,912 - 16058 mRNA_7690 0.67 -0.1
848,233 - 16058 mRNA_7690 0.79 -0.9
848,233 + 16058 mRNA_7690 0.79 1.6
848,330 - 16058 mRNA_7690 0.83 -1.9
848,336 - 16058 mRNA_7690 0.84 0.1
848,511 - -0.9
848,515 + 0.2
848,520 - -0.9
848,631 - -0.3
848,643 + 0.5
848,652 - -0.1
848,755 + -0.1
848,786 - -0.8
848,909 + -0.9
848,936 - 0.3
848,981 + -1.8
849,129 - -1.2
849,137 - 0.3
849,242 - 0.8
849,341 - 16059 mRNA_7691 0.20 1.5
849,385 - 16059 mRNA_7691 0.26 0.3
849,394 - 16059 mRNA_7691 0.27 -0.7
849,399 - 16059 mRNA_7691 0.28 -1.4
849,471 + 16059 mRNA_7691 0.38 -1.1
849,506 + 16059 mRNA_7691 0.42 1.6
849,506 - 16059 mRNA_7691 0.42 -0.9
849,594 + 16059 mRNA_7691 0.54 -0.4