Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7625

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706730 to 707973 15992 mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708151 to 709093 15993 mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709563 to 711029 15994

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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707,152 + 15992 mRNA_7624 0.34 0.1
707,158 + 15992 mRNA_7624 0.34 -0.3
707,250 + 15992 mRNA_7624 0.42 1.1
707,278 + 15992 mRNA_7624 0.44 -2.1
707,406 + 15992 mRNA_7624 0.54 1.5
707,724 + 15992 mRNA_7624 0.80 -0.7
707,785 - 15992 mRNA_7624 0.85 -0.7
707,837 + 15992 mRNA_7624 0.89 1.2
707,848 - 15992 mRNA_7624 0.90 -0.5
707,905 + -1.0
707,980 - -0.5
707,994 - -0.9
707,996 + 1.2
707,997 + 0.7
708,002 - 0.2
708,026 - -0.5
708,057 - 0.6
708,130 - -0.3
708,135 + -0.3
708,136 - -0.2
708,465 + 15993 mRNA_7625 0.33 -0.1
708,581 + 15993 mRNA_7625 0.46 0.5
708,689 + 15993 mRNA_7625 0.57 -0.6
708,757 - 15993 mRNA_7625 0.64 0.0
708,849 - 15993 mRNA_7625 0.74 0.4
708,853 - 15993 mRNA_7625 0.74 0.4
708,869 - 15993 mRNA_7625 0.76 3.0
708,883 - 15993 mRNA_7625 0.78 1.3
708,895 + 15993 mRNA_7625 0.79 1.5
708,898 + 15993 mRNA_7625 0.79 -0.7
709,030 - 0.5
709,140 - -0.8
709,146 - 0.1
709,153 - -1.2
709,167 - -3.2
709,167 + -1.2
709,178 - -0.6
709,191 + 1.6
709,203 + 0.9
709,204 + 0.7
709,206 + 0.9
709,223 + -0.7
709,232 - 1.2
709,235 - -0.7
709,235 - 0.5
709,236 + -0.5
709,238 + 0.6
709,238 + -1.9
709,240 + 0.9
709,242 + -2.1
709,249 - -0.3
709,257 - 0.3
709,319 - -0.7
709,319 + 0.0
709,325 - -0.7
709,343 + 0.6
709,473 + -0.2
709,489 + -0.8
709,491 - -2.0
709,492 - 0.0
709,492 - 1.3
709,498 + 3.0
709,801 - 15994 mRNA_7626 0.16 0.5