Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7584

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7583: 15951 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 616198 to 617544 15951 mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617839 to 618826 15952 mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619020 to 621044 15953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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617,080 + 15951 mRNA_7583 0.65 0.1
617,214 + 15951 mRNA_7583 0.75 3.1
617,251 - 15951 mRNA_7583 0.78 1.6
617,349 + 15951 mRNA_7583 0.85 -0.1
617,364 - 15951 mRNA_7583 0.87 0.8
617,484 + 1.7
617,622 + -0.7
617,633 - -0.4
617,686 + 1.5
617,794 + 0.7
617,833 + -0.9
618,089 - 15952 mRNA_7584 0.25 -0.1
618,239 - 15952 mRNA_7584 0.40 -1.9
618,689 - 15952 mRNA_7584 0.86 0.7
618,698 + 15952 mRNA_7584 0.87 1.4
618,814 + 0.4
618,825 + 2.2
618,843 - -0.3
618,960 - 0.7
618,969 - 2.4
618,971 - -0.3
618,974 + 0.4
619,683 - 15953 mRNA_7585 0.33 0.6
619,717 - 15953 mRNA_7585 0.34 -0.5
619,718 - 15953 mRNA_7585 0.34 -0.3