Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7555

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548985 to 552468 15922 mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552807 to 554579 15923 mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554930 to 556179 15924

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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552,162 + -0.2
552,288 + -1.2
552,296 - -0.6
552,437 - -0.4
552,495 + 1.4
552,515 + -0.6
552,879 - 1.2
552,914 + 0.1
552,914 - -0.4
553,148 + 15923 mRNA_7555 0.19 -0.1
553,193 + 15923 mRNA_7555 0.22 0.5
553,207 + 15923 mRNA_7555 0.23 -0.7
553,432 - 15923 mRNA_7555 0.35 -3.1
553,477 - 15923 mRNA_7555 0.38 1.2
553,489 - 15923 mRNA_7555 0.38 1.4
553,612 + 15923 mRNA_7555 0.45 0.9
553,794 + 15923 mRNA_7555 0.56 0.1
553,805 + 15923 mRNA_7555 0.56 -1.4
554,056 - 15923 mRNA_7555 0.70 -0.5
554,195 - 15923 mRNA_7555 0.78 -0.3
554,231 + 15923 mRNA_7555 0.80 -1.3
554,501 - -1.3
554,503 - 0.5
554,648 + -0.6
554,655 - -0.6
554,671 - 0.4
554,777 + 2.2
554,799 + -2.1
554,812 - -2.1
554,819 + -0.6
554,819 + 0.2
554,822 - -0.9
554,832 + -0.1
554,851 + -0.8
554,997 - -0.3
555,257 - 15924 mRNA_7556 0.26 -0.6
555,421 + 15924 mRNA_7556 0.39 0.1