Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7524

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492081 to 493296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495321 to 495867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495978 to 498115 15894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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492,904 + 15891 mRNA_7523 0.68 -0.8
492,919 + 15891 mRNA_7523 0.69 2.2
492,921 + 15891 mRNA_7523 0.69 0.9
493,059 + 15891 mRNA_7523 0.80 0.2
493,066 + 15891 mRNA_7523 0.81 -0.3
493,344 - -0.0
493,349 - 0.5
493,361 + 0.1
493,383 - -0.4
493,498 + 0.7
493,524 - 1.3
493,526 + 0.9
493,540 - -0.2
493,656 + -1.3
493,823 - 15892 mRNA_7524 0.17 0.2
493,933 + 15892 mRNA_7524 0.23 0.9
493,985 - 15892 mRNA_7524 0.26 1.1
495,157 - 0.6
495,613 - 15893 mRNA_7525 0.53 -0.3
495,637 + 15893 mRNA_7525 0.58 -1.7
495,738 + 15893 mRNA_7525 0.76 0.6
495,756 + 15893 mRNA_7525 0.80 0.2
495,765 + 15893 mRNA_7525 0.81 1.5
495,890 + -0.0
495,893 + -0.8
495,896 + -0.3
495,897 + 0.4
495,914 - 0.0
495,929 - -0.7
495,935 - 0.6
495,945 - 2.7
495,946 - -0.6
495,951 - -0.1
496,056 - -1.1
496,075 + 0.7
496,091 + -0.9