Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7523

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490428 to 491714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492081 to 493296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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491,085 - 15890 mRNA_7522 0.51 3.2
491,425 - 15890 mRNA_7522 0.77 0.2
491,543 - 15890 mRNA_7522 0.87 1.2
491,573 + 15890 mRNA_7522 0.89 0.1
491,646 - 1.5
491,647 + 1.3
491,760 - 0.9
491,849 - 0.2
491,986 + -0.4
492,005 - -1.6
492,044 + 0.2
492,053 + -1.9
492,063 + 0.1
492,303 - 15891 mRNA_7523 0.18 -1.1
492,418 + 15891 mRNA_7523 0.28 -0.2
492,452 - 15891 mRNA_7523 0.31 -1.4
492,904 + 15891 mRNA_7523 0.68 -0.8
492,919 + 15891 mRNA_7523 0.69 2.2
492,921 + 15891 mRNA_7523 0.69 0.9
493,059 + 15891 mRNA_7523 0.80 0.2
493,066 + 15891 mRNA_7523 0.81 -0.3
493,344 - -0.0
493,349 - 0.5
493,361 + 0.1
493,383 - -0.4
493,498 + 0.7
493,524 - 1.3
493,526 + 0.9
493,540 - -0.2
493,656 + -1.3
493,823 - 15892 mRNA_7524 0.17 0.2
493,933 + 15892 mRNA_7524 0.23 0.9
493,985 - 15892 mRNA_7524 0.26 1.1