Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7345

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46801 to 48602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49119 to 56418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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48,306 + 15712 mRNA_7344 0.84 -1.7
48,340 - 15712 mRNA_7344 0.85 1.2
48,514 - 1.3
48,656 - 0.1
48,657 - 0.6
48,658 - -0.7
48,659 + 0.2
48,665 - -0.9
48,670 + 0.7
48,673 + 0.0
48,682 + -2.1
48,686 - -0.7
48,691 + -0.4
48,695 + 0.6
48,785 - 1.6
48,809 - 0.5
48,810 - -0.1
48,812 - 0.8
48,834 - 0.7
48,857 - 1.4
48,869 - 0.9
48,871 - -1.2
48,877 - -1.7
48,891 + -0.1
48,892 - 0.1
48,948 - -0.7
49,009 - -0.3
49,086 + -1.9
49,113 - 0.6
49,193 + 1.5
49,449 - 1.9
49,679 + 0.4
49,704 + -0.4
49,812 + 0.4
50,053 - 15713 mRNA_7345 0.13 -0.0
50,127 - 15713 mRNA_7345 0.14 0.1
50,301 - 15713 mRNA_7345 0.16 1.4
50,312 + 15713 mRNA_7345 0.16 0.8
50,390 - 15713 mRNA_7345 0.17 1.7
50,843 + 15713 mRNA_7345 0.24 0.5
50,894 - 15713 mRNA_7345 0.24 0.2
50,915 + 15713 mRNA_7345 0.25 -0.7
50,941 - 15713 mRNA_7345 0.25 -0.9
51,223 + 15713 mRNA_7345 0.29 -3.4
51,441 - 15713 mRNA_7345 0.32 -0.8
51,801 - 15713 mRNA_7345 0.37 0.1
51,849 + 15713 mRNA_7345 0.37 -0.6
51,884 + 15713 mRNA_7345 0.38 0.0
51,912 + 15713 mRNA_7345 0.38 0.2
52,138 - 15713 mRNA_7345 0.41 -1.3
52,148 + 15713 mRNA_7345 0.41 1.1
52,148 + 15713 mRNA_7345 0.41 -0.2
52,187 - 15713 mRNA_7345 0.42 -0.4
52,265 + 15713 mRNA_7345 0.43 -0.2
52,705 + 15713 mRNA_7345 0.49 -1.7
52,726 - 15713 mRNA_7345 0.49 1.0
52,726 - 15713 mRNA_7345 0.49 0.1
52,726 - 15713 mRNA_7345 0.49 -0.1
52,777 + 15713 mRNA_7345 0.50 -2.5
52,804 + 15713 mRNA_7345 0.50 -0.3
52,904 - 15713 mRNA_7345 0.52 -0.3
53,045 - 15713 mRNA_7345 0.54 -0.6
53,083 - 15713 mRNA_7345 0.54 -0.0
53,148 - 15713 mRNA_7345 0.55 0.8
54,129 - 15713 mRNA_7345 0.69 -0.4
54,246 - 15713 mRNA_7345 0.70 0.8
54,429 - 15713 mRNA_7345 0.73 -0.1
54,448 + 15713 mRNA_7345 0.73 0.2
54,574 + 15713 mRNA_7345 0.75 0.9
54,789 + 15713 mRNA_7345 0.78 -0.6
54,825 + 15713 mRNA_7345 0.78 0.2
55,326 + 15713 mRNA_7345 0.85 -0.6
55,636 + 15713 mRNA_7345 0.89 -1.4
55,636 + 15713 mRNA_7345 0.89 1.3
55,839 - 0.6
55,864 - 0.2
56,023 - -1.6
56,392 - -1.2
56,461 - 1.3
56,600 - -0.4
56,632 + -0.4
56,640 + 0.6
56,648 + 3.0
56,651 + 0.3
56,793 - 0.8
56,794 + 0.2
56,803 + 0.8
56,811 + -0.7
56,817 + 1.9
56,818 - 3.0
56,832 + -0.8
56,845 + 1.2
56,913 - 1.8
56,918 - -0.3
56,938 - -0.4
56,951 + -2.9
56,964 - 3.4
56,976 + -0.8
56,977 + 0.3
56,981 + -1.2
56,985 + 2.0
56,986 + 0.8
56,990 - -0.0
56,991 - 0.1
56,997 + -1.2
57,052 - -0.3
57,055 + 0.0
57,065 + -0.2
57,074 + 1.2
57,079 - -0.7
57,091 - 0.6
57,092 + -0.4
57,096 - 0.0
57,098 - -0.5
57,101 + 1.3
57,101 + -2.0
57,101 + -1.2
57,110 - -0.3
57,120 - -0.0
57,195 + -0.5
57,206 - -0.9
57,219 + -1.8
57,243 + 2.3
57,254 + -0.8
57,260 - 2.5
57,266 + 1.1
57,267 - 0.9
57,268 + 1.6
57,272 - -0.9
57,291 + 0.5
57,347 + 2.1