Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7278

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7277: 15645 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1279656 to 1282236 15645 mRNA_7278: 15646 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1282472 to 1285388 15646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,281,504 + 15645 mRNA_7277 0.72 -0.6
1,281,526 + 15645 mRNA_7277 0.72 -2.5
1,281,639 - 15645 mRNA_7277 0.77 0.2
1,281,640 + 15645 mRNA_7277 0.77 -1.1
1,281,657 + 15645 mRNA_7277 0.78 -1.5
1,281,693 - 15645 mRNA_7277 0.79 1.6
1,281,819 + 15645 mRNA_7277 0.84 -0.3
1,281,830 + 15645 mRNA_7277 0.84 0.2
1,281,993 - 0.4
1,282,125 + 0.3
1,282,244 - 2.3
1,282,266 - -0.2
1,282,421 - -0.7
1,282,422 - -0.5
1,282,427 + -0.3
1,282,429 - -1.3
1,282,555 + 0.5
1,282,557 - -0.7
1,282,710 + 1.8
1,282,715 - -1.4
1,282,716 - -0.5
1,282,726 + 0.7
1,282,873 - 15646 mRNA_7278 0.14 1.5
1,282,890 - 15646 mRNA_7278 0.14 0.0
1,282,895 + 15646 mRNA_7278 0.15 -0.8
1,283,006 - 15646 mRNA_7278 0.18 0.2
1,283,014 - 15646 mRNA_7278 0.19 -1.9
1,283,177 - 15646 mRNA_7278 0.24 -1.3
1,283,331 - 15646 mRNA_7278 0.29 -0.7
1,283,400 + 15646 mRNA_7278 0.32 1.9
1,283,457 - 15646 mRNA_7278 0.34 1.7
1,283,576 + 15646 mRNA_7278 0.38 -1.3
1,283,580 - 15646 mRNA_7278 0.38 0.5
1,283,652 - 15646 mRNA_7278 0.40 -1.2
1,283,698 - 15646 mRNA_7278 0.42 2.0
1,283,762 + 15646 mRNA_7278 0.44 0.6
1,284,064 - 15646 mRNA_7278 0.55 -1.1
1,284,185 + 15646 mRNA_7278 0.59 -0.7
1,284,187 - 15646 mRNA_7278 0.59 2.2
1,284,292 - 15646 mRNA_7278 0.62 -0.4
1,284,338 + 15646 mRNA_7278 0.64 -1.7
1,284,433 - 15646 mRNA_7278 0.67 1.1
1,284,433 + 15646 mRNA_7278 0.67 0.3
1,284,436 - 15646 mRNA_7278 0.67 1.3
1,284,457 - 15646 mRNA_7278 0.68 -0.4
1,284,817 - 15646 mRNA_7278 0.80 0.4
1,284,859 - 15646 mRNA_7278 0.82 0.7
1,284,877 + 15646 mRNA_7278 0.82 0.5
1,284,894 - 15646 mRNA_7278 0.83 -0.1
1,285,036 + 15646 mRNA_7278 0.88 3.6
1,285,074 + 15646 mRNA_7278 0.89 -0.4
1,285,165 - -0.3
1,285,165 - 0.0
1,285,194 - 0.6
1,285,232 + -1.2
1,285,448 - -0.8
1,285,487 - -0.4
1,285,503 - 0.7
1,285,523 - -0.0
1,285,573 - -1.0
1,285,656 - -0.8
1,285,763 - 0.2
1,285,765 + 1.1
1,285,803 - -0.1
1,286,102 - 0.4
1,286,105 - -0.3
1,286,112 - -2.5
1,286,112 + 0.4
1,286,155 - 0.3
1,286,165 + 0.7
1,286,213 + -0.0
1,286,232 - 0.1
1,286,372 - 0.9