Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6976

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582618 to 583763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583790 to 584346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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581,656 + -0.4
581,675 - 1.0
581,705 - -0.7
581,709 - -0.9
581,720 + 2.0
581,725 + 1.4
581,728 + 1.1
581,730 - 0.1
581,732 + -0.9
581,734 - -1.6
581,734 - 1.3
581,743 + 0.9
581,751 + 0.8
581,755 - -1.5
581,780 - -0.3
581,789 - 2.7
581,795 - 1.7
581,797 - 1.4
581,797 - 0.4
581,800 + 0.5
581,812 + -1.8
581,828 - -0.5
581,846 - 0.7
581,870 - 1.6
581,905 + -0.0
581,969 + -0.7
581,982 - -1.6
581,984 - -0.5
581,987 - -0.8
581,990 - 1.1
581,992 + 0.7
581,993 - -0.1
581,997 - 0.6
582,000 - 0.1
582,004 + -1.4
582,019 - 1.9
582,027 + 0.2
582,035 - -1.9
582,049 - 1.7
582,055 - 1.2
582,056 - -2.3
582,062 + -0.0
582,069 + 0.2
582,071 + 1.5
582,071 - -0.5
582,111 - 0.4
582,125 - -0.7
582,152 - -1.0
582,161 + -0.1
582,164 - -0.0
582,173 - 0.4
582,177 + 0.8
582,181 + -0.9
582,185 + -0.6
582,187 - 1.6
582,199 - -4.0
582,319 + 0.6
582,324 + -1.7
582,350 - -0.8
582,354 - -1.5
582,354 - -1.1
582,375 - -1.1
582,435 - -0.1
582,441 + -0.4
582,468 - -0.4
582,492 - -1.6
582,492 + 0.6
582,596 - 0.2
582,690 - -0.1
582,932 + 15344 mRNA_6976 0.27 1.8
582,952 + 15344 mRNA_6976 0.29 0.9
583,366 + 15344 mRNA_6976 0.65 -1.3
583,375 + 15344 mRNA_6976 0.66 0.5
583,496 + 15344 mRNA_6976 0.77 1.1
584,005 + 15345 mRNA_6977 0.39 -0.2
584,135 - 15345 mRNA_6977 0.62 0.1
584,245 + 15345 mRNA_6977 0.82 1.6
584,388 - 0.6
584,391 - -0.9
584,392 - 0.7
584,395 - 1.9
584,399 - -2.4
584,401 - -0.2
584,406 - 0.4
584,407 + 0.5
584,411 - 0.3
584,431 + -0.7
584,441 - -0.1
584,447 - -1.1
584,448 + -0.4
584,696 - 15346 mRNA_6978 0.17 -0.1
584,721 + 15346 mRNA_6978 0.19 -1.3
584,724 - 15346 mRNA_6978 0.20 1.7
584,756 - 15346 mRNA_6978 0.22 -2.8