Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6877

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6876: 15244 - Hypothetical Protein, at 331964 to 333369 15244 mRNA_6877: 15245 - KOG3912 Predicted integral membrane protein, at 333940 to 335664 15245 mRNA_6878: 15246 - Hypothetical Protein, at 336043 to 337941 15246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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333,028 + 15244 mRNA_6876 0.76 1.6
333,051 + 15244 mRNA_6876 0.77 -1.3
333,326 - -0.4
333,326 + -0.1
333,456 - 1.5
333,470 - -1.4
333,530 - 0.3
333,626 + -0.2
333,627 - -1.6
333,639 + 0.5
333,646 - -1.5
333,648 + 1.1
333,650 + -1.2
333,660 + -1.9
333,791 - -0.7
333,961 + 0.3
334,080 - -0.3
334,095 - 0.6
334,188 - 15245 mRNA_6877 0.14 3.0
334,196 - 15245 mRNA_6877 0.15 -2.6
334,200 + 15245 mRNA_6877 0.15 1.7
334,332 - 15245 mRNA_6877 0.23 0.3
334,640 + 15245 mRNA_6877 0.41 -0.5
334,658 + 15245 mRNA_6877 0.42 -0.3
334,674 - 15245 mRNA_6877 0.43 0.1
334,675 + 15245 mRNA_6877 0.43 -2.3
334,685 + 15245 mRNA_6877 0.43 1.1
334,794 - 15245 mRNA_6877 0.50 0.0
334,815 + 15245 mRNA_6877 0.51 -1.1
334,953 - 15245 mRNA_6877 0.59 1.9
335,206 - 15245 mRNA_6877 0.73 0.1
335,376 + 15245 mRNA_6877 0.83 -0.3
335,549 + 1.0
335,663 + -1.3
336,347 - 15246 mRNA_6878 0.16 0.3
336,355 - 15246 mRNA_6878 0.16 0.1
336,367 - 15246 mRNA_6878 0.17 0.0
336,511 + 15246 mRNA_6878 0.25 -1.1
336,532 + 15246 mRNA_6878 0.26 2.4