Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6844

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6843: 15211 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 252039 to 252813 15211 mRNA_6844: 15212 - K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101, at 253096 to 258115 15212 mRNA_6845: 15213 - Hypothetical Protein, at 258219 to 259363 15213

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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252,147 + 15211 mRNA_6843 0.14 -0.4
252,160 - 15211 mRNA_6843 0.16 -0.4
252,165 + 15211 mRNA_6843 0.16 -1.4
252,315 + 15211 mRNA_6843 0.36 -1.9
252,324 - 15211 mRNA_6843 0.37 0.1
252,330 - 15211 mRNA_6843 0.38 -0.6
252,416 - 15211 mRNA_6843 0.49 0.0
252,599 - 15211 mRNA_6843 0.72 -0.0
252,610 - 15211 mRNA_6843 0.74 -1.8
253,184 - -0.2
253,309 + -0.3
253,494 - -0.4
253,665 + 15212 mRNA_6844 0.11 0.5
253,724 + 15212 mRNA_6844 0.13 0.1
253,733 - 15212 mRNA_6844 0.13 -1.2
253,761 - 15212 mRNA_6844 0.13 -1.6
253,788 + 15212 mRNA_6844 0.14 -1.2
254,188 + 15212 mRNA_6844 0.22 -0.0
254,330 + 15212 mRNA_6844 0.25 0.6
254,607 - 15212 mRNA_6844 0.30 1.0
254,663 - 15212 mRNA_6844 0.31 1.4
254,728 - 15212 mRNA_6844 0.33 2.3
254,776 + 15212 mRNA_6844 0.33 -0.4
255,611 - 15212 mRNA_6844 0.50 0.7
258,228 - -0.9
258,290 + 1.0
258,445 - 15213 mRNA_6845 0.20 -0.4
258,447 + 15213 mRNA_6845 0.20 -0.4
258,676 - 15213 mRNA_6845 0.40 -2.0
258,798 - 15213 mRNA_6845 0.51 2.4
258,811 + 15213 mRNA_6845 0.52 -0.7
258,812 + 15213 mRNA_6845 0.52 -0.1
258,907 + 15213 mRNA_6845 0.60 -0.2
258,981 + 15213 mRNA_6845 0.67 -1.1
259,055 - 15213 mRNA_6845 0.73 -0.7