Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6836

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237797 to 238899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239396 to 240785 15205

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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236,811 - -0.1
236,813 + -1.5
236,817 - -0.6
236,818 + -1.2
236,823 - 0.0
236,824 - 0.8
236,825 - -0.7
236,829 - -1.3
236,831 + -0.0
236,836 - -0.1
236,836 - -1.1
236,836 - -1.6
236,840 + -0.6
236,840 + 0.6
236,858 - 0.3
236,991 + -0.7
237,010 + 0.6
237,025 - -2.0
237,027 - -0.3
237,055 - -1.6
237,064 - 0.3
237,109 + -0.1
237,145 - 0.5
237,145 - -0.9
237,154 + 0.2
237,159 + -1.5
237,262 + -1.5
237,266 + -1.0
237,274 + -0.8
237,274 + -0.8
237,278 + -0.2
237,292 + 0.0
237,299 - 0.2
237,325 - -1.4
237,333 - 1.5
237,361 + -0.1
237,366 + 0.4
237,377 + 1.1
237,378 + -3.1
237,378 + 1.5
237,384 + 0.6
237,415 - 0.2
237,428 + 0.8
237,475 + -0.6
237,519 - -0.2
237,519 - 0.8
237,521 - 1.5
237,526 + 1.3
237,531 + 0.0
237,533 - 0.1
237,533 - -1.0
237,541 + 3.1
237,541 + 2.7
237,541 + -1.9
237,541 + 0.4
237,545 - -0.2
237,557 - -1.0
237,563 + 1.1
237,571 - 1.1
237,571 - 0.8
237,817 - -0.4
237,868 + 1.0
238,080 + 15204 mRNA_6836 0.26 -1.8
238,426 - 15204 mRNA_6836 0.57 -0.3
238,477 + 15204 mRNA_6836 0.62 0.3
238,528 - 15204 mRNA_6836 0.66 0.9
238,821 - -0.9
238,848 - 1.7
238,855 + 1.3
238,857 + -0.2
238,859 + 0.1
238,866 + 0.1
238,993 - 0.8
239,016 - -0.6
239,025 - -0.3
239,027 + -1.3
239,040 - -0.1
239,057 - -1.1
239,058 + -2.1
239,060 + 0.9
239,073 + -0.5
239,158 + -1.3
239,159 - 0.2
239,185 - -1.0
239,201 + -2.2
239,218 - -2.0
239,275 - -0.6
239,293 - -1.1
239,323 + -1.1
239,470 - 1.1
239,622 - 15205 mRNA_6837 0.16 -0.0
239,624 - 15205 mRNA_6837 0.16 -1.7
239,630 + 15205 mRNA_6837 0.17 -0.9
239,770 + 15205 mRNA_6837 0.27 0.1