Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6807

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176839 to 177908 15174 mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178332 to 182273 15175 mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182860 to 191504 15176

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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177,781 + 15174 mRNA_6806 0.88 0.1
177,957 + -1.2
178,128 - -2.4
178,149 + -0.8
178,588 - -0.2
178,699 - -1.3
178,861 + 15175 mRNA_6807 0.13 0.5
179,262 + 15175 mRNA_6807 0.24 -0.5
179,705 - 15175 mRNA_6807 0.35 -0.9
179,876 + 15175 mRNA_6807 0.39 1.4
180,166 + 15175 mRNA_6807 0.47 0.2
180,784 - 15175 mRNA_6807 0.62 0.7
180,859 + 15175 mRNA_6807 0.64 0.2
181,082 + 15175 mRNA_6807 0.70 0.5
181,145 + 15175 mRNA_6807 0.71 1.4
181,478 + 15175 mRNA_6807 0.80 -1.7
182,204 - 1.4
182,215 - -0.5
182,362 + -0.8
182,362 + 0.1
182,365 - -1.1
182,383 - -1.1
182,404 - 0.1
182,501 - 0.4
182,515 - -1.4
182,522 - -1.2
182,526 + 2.5
182,526 - 0.0
182,527 + -0.3
182,532 + 0.6
182,542 + 0.3
182,548 + 1.2
182,548 + -0.9
182,548 + 0.2
182,550 + 2.6
182,678 - 0.8
182,680 - 0.0
182,682 - 1.9
182,818 - 0.4
182,838 - 0.2