Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6802

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169 mRNA_6802: 15170 - Hypothetical Protein, at 170561 to 172312 15170 mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172404 to 173557 15171

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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169,661 + 15169 mRNA_6801 0.66 0.4
169,662 - 15169 mRNA_6801 0.66 0.4
169,965 - 15169 mRNA_6801 0.83 -0.1
170,115 - 1.7
170,278 - 0.3
170,279 - -0.1
170,356 - 0.0
170,383 - -0.5
170,388 + -0.8
170,402 - -0.0
170,407 - 0.6
170,410 + -2.5
170,438 - 0.1
170,444 - 0.2
170,444 + -0.7
170,445 - -0.4
170,445 + -0.9
170,446 - -0.8
170,447 + -1.7
170,449 + 0.8
170,453 + -0.0
170,453 + 0.1
170,454 + 0.0
170,460 - -0.9
170,460 + -1.0
170,470 - -0.9
170,479 + -0.4
170,489 + -0.3
170,591 - -0.8
170,603 + -0.3
170,607 - -0.2
170,612 - 1.1
170,618 + 0.8
170,635 + -0.9
170,646 + -0.1
170,655 + -0.5
170,765 - 15170 mRNA_6802 0.12 1.9
170,778 - 15170 mRNA_6802 0.12 -0.5
170,783 + 15170 mRNA_6802 0.13 0.2
170,806 - 15170 mRNA_6802 0.14 -1.3
170,810 + 15170 mRNA_6802 0.14 -2.2
170,961 - 15170 mRNA_6802 0.23 -0.2
171,223 + 15170 mRNA_6802 0.38 0.6
171,373 + 15170 mRNA_6802 0.46 0.4
171,545 - 15170 mRNA_6802 0.56 0.5
171,576 + 15170 mRNA_6802 0.58 -0.6
171,661 - 15170 mRNA_6802 0.63 -0.1
171,825 + 15170 mRNA_6802 0.72 0.2
172,104 + 15170 mRNA_6802 0.88 -0.7
172,105 - 15170 mRNA_6802 0.88 -0.5
172,311 + 0.7
172,316 - -0.9
172,426 - 1.2
172,450 + -1.0
172,495 - 0.4
172,567 + 15171 mRNA_6803 0.14 -0.6
172,859 + 15171 mRNA_6803 0.39 0.1
172,870 - 15171 mRNA_6803 0.40 -0.1
173,001 + 15171 mRNA_6803 0.52 2.5
173,129 + 15171 mRNA_6803 0.63 -1.2
173,163 + 15171 mRNA_6803 0.66 -0.4
173,273 - 15171 mRNA_6803 0.75 0.3