Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6662

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1379343 to 1382272 15030 mRNA_6663: 15031 - Hypothetical Protein, at 1382729 to 1383844 15031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,378,381 + 0.7
1,378,547 + -2.0
1,378,652 + 0.5
1,378,688 + 0.1
1,378,780 - 1.8
1,378,822 - -0.4
1,378,822 - 0.6
1,378,953 - 0.4
1,379,209 - -0.1
1,379,226 + 0.5
1,379,331 - 0.4
1,379,342 - -0.1
1,379,378 + 1.4
1,379,380 - -2.8
1,379,391 + 0.8
1,379,543 + -1.1
1,379,670 - 15030 mRNA_6662 0.11 -3.0
1,380,433 + 15030 mRNA_6662 0.37 -1.4
1,382,310 - -1.7
1,382,320 + 0.1
1,382,731 + -0.8
1,382,773 - -1.6
1,382,907 + 15031 mRNA_6663 0.16 0.3