Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6627

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6626: 14994 - Hypothetical Protein, at 1278893 to 1279645 14994 mRNA_6627: 14995 - KOG1114 Tripeptidyl peptidase II, at 1280374 to 1283965 14995 mRNA_6628: 14996 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1284165 to 1286987 14996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,279,374 - 14994 mRNA_6626 0.64 0.5
1,279,451 + 14994 mRNA_6626 0.74 -0.4
1,279,726 + 0.8
1,279,758 + -0.8
1,279,761 + -0.1
1,279,788 - 0.3
1,279,833 + -0.3
1,279,851 - 0.2
1,279,860 + -1.3
1,279,862 + -0.5
1,279,968 - -1.0
1,279,969 + 1.1
1,280,064 + 2.9
1,280,068 - 0.8
1,280,079 + 1.3
1,280,097 + 0.8
1,280,097 + -2.6
1,280,106 + -0.1
1,280,119 + -1.3
1,280,131 - -1.9
1,280,145 + 0.4
1,280,147 + -0.5
1,280,748 + 14995 mRNA_6627 0.10 -0.3
1,280,764 - 14995 mRNA_6627 0.11 -0.1
1,281,005 + 14995 mRNA_6627 0.18 0.8
1,281,009 + 14995 mRNA_6627 0.18 0.2
1,281,062 - 14995 mRNA_6627 0.19 1.7
1,281,118 - 14995 mRNA_6627 0.21 -0.8
1,281,125 + 14995 mRNA_6627 0.21 1.2
1,281,128 - 14995 mRNA_6627 0.21 -1.1
1,281,182 - 14995 mRNA_6627 0.22 0.1
1,281,196 + 14995 mRNA_6627 0.23 1.2
1,281,433 - 14995 mRNA_6627 0.29 0.1
1,281,488 + 14995 mRNA_6627 0.31 -0.6
1,281,584 - 14995 mRNA_6627 0.34 -0.9
1,281,917 + 14995 mRNA_6627 0.43 -2.2
1,281,920 + 14995 mRNA_6627 0.43 0.2
1,281,951 - 14995 mRNA_6627 0.44 -1.2
1,282,102 - 14995 mRNA_6627 0.48 -0.9
1,282,378 - 14995 mRNA_6627 0.56 -1.0
1,282,413 - 14995 mRNA_6627 0.57 -1.0
1,282,527 - 14995 mRNA_6627 0.60 0.1
1,282,625 - 14995 mRNA_6627 0.63 -0.0
1,282,638 - 14995 mRNA_6627 0.63 0.4
1,282,709 - 14995 mRNA_6627 0.65 0.6
1,283,034 - 14995 mRNA_6627 0.74 -0.3
1,283,056 - 14995 mRNA_6627 0.75 -0.4
1,283,109 + 14995 mRNA_6627 0.76 0.7
1,283,154 + 14995 mRNA_6627 0.77 0.4
1,283,415 + 14995 mRNA_6627 0.85 0.2
1,283,447 - 14995 mRNA_6627 0.86 -0.6
1,283,453 - 14995 mRNA_6627 0.86 0.6
1,283,786 - 0.1
1,284,085 - -1.4
1,284,124 + -1.0
1,284,143 - 0.4
1,284,516 + 14996 mRNA_6628 0.12 2.6
1,284,521 - 14996 mRNA_6628 0.13 -2.1
1,284,705 + 14996 mRNA_6628 0.19 -2.6
1,284,799 - 14996 mRNA_6628 0.22 0.1
1,284,802 + 14996 mRNA_6628 0.23 0.2
1,284,828 + 14996 mRNA_6628 0.23 -0.1
1,284,857 + 14996 mRNA_6628 0.25 0.1