Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6549

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1055237 to 1061964 14916 mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1062959 to 1066157 14917 mRNA_6550: 14918 - K11374 ELP2 elongator complex protein 2, at 1066227 to 1069568 14918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,062,022 - -2.0
1,062,097 - 0.7
1,062,161 - 0.6
1,062,172 + 1.6
1,062,602 + -1.1
1,062,730 + -0.8
1,062,878 - -1.0
1,062,890 - -1.9
1,062,926 - -0.1
1,063,578 + 14917 mRNA_6549 0.19 -0.3
1,063,637 - 14917 mRNA_6549 0.21 -3.4
1,063,771 - 14917 mRNA_6549 0.25 -0.8
1,063,787 + 14917 mRNA_6549 0.26 0.3
1,063,848 + 14917 mRNA_6549 0.28 0.1
1,064,035 - 14917 mRNA_6549 0.34 0.1
1,064,194 + 14917 mRNA_6549 0.39 -0.7
1,064,431 - 14917 mRNA_6549 0.46 0.8
1,064,667 - 14917 mRNA_6549 0.53 -1.9
1,064,771 + 14917 mRNA_6549 0.57 -0.9
1,064,997 - 14917 mRNA_6549 0.64 1.6
1,065,016 - 14917 mRNA_6549 0.64 -0.4
1,065,136 + 14917 mRNA_6549 0.68 0.5
1,065,277 - 14917 mRNA_6549 0.72 -1.8
1,065,346 + 14917 mRNA_6549 0.75 0.1
1,065,373 + 14917 mRNA_6549 0.75 0.1
1,065,405 - 14917 mRNA_6549 0.76 -0.0
1,065,498 - 14917 mRNA_6549 0.79 0.3
1,065,529 + 14917 mRNA_6549 0.80 -0.5
1,065,622 + 14917 mRNA_6549 0.83 1.3
1,065,672 + 14917 mRNA_6549 0.85 1.3
1,065,824 + 14917 mRNA_6549 0.90 0.2
1,066,065 + 0.8
1,066,076 - 0.7
1,066,131 + -0.2
1,066,303 - -0.4