Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6492

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912748 to 918213 14859 mRNA_6492: 14860 - KOG3269 Predicted membrane protein, at 918835 to 919868 14860 mRNA_6493: 14861 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 920025 to 920861 14861

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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918,114 - 2.3
918,383 - 0.3
918,390 + 0.5
918,419 + 0.7
918,420 + -0.8
918,439 - -1.1
918,439 + 2.2
918,582 - -0.8
918,583 - -0.6
918,586 + 0.5
919,005 - 14860 mRNA_6492 0.16 0.3
919,023 + 14860 mRNA_6492 0.18 -1.2
919,617 + 14860 mRNA_6492 0.76 -0.0
919,621 - 14860 mRNA_6492 0.76 -1.6
919,761 + 14860 mRNA_6492 0.90 -0.9
919,766 + -0.2
919,782 + -0.0
919,799 - -0.5
919,858 + -1.4