Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6469

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836 mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858043 to 864348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864745 to 865870 14838

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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857,804 + -0.6
857,872 + 0.3
857,900 + -0.5
858,041 + 1.5
858,150 - -1.0
860,303 - 14837 mRNA_6469 0.36 0.5
861,323 - 14837 mRNA_6469 0.52 1.7
861,728 + 14837 mRNA_6469 0.58 -2.1
862,446 + 14837 mRNA_6469 0.70 0.5
862,563 - 14837 mRNA_6469 0.72 -0.0
863,932 - 1.9
863,938 - 3.3
864,093 - 1.0
864,093 - -0.1
864,182 + 0.8
864,385 - 0.5
864,401 + -2.3
864,685 + 1.3
864,793 + 0.2
864,842 + 1.4
864,869 - 14838 mRNA_6470 0.11 1.5
864,977 + 14838 mRNA_6470 0.21 -0.7
864,979 + 14838 mRNA_6470 0.21 2.5
864,986 - 14838 mRNA_6470 0.21 0.3
865,031 + 14838 mRNA_6470 0.25 1.8
865,139 + 14838 mRNA_6470 0.35 -0.2
865,170 + 14838 mRNA_6470 0.38 2.1
865,302 - 14838 mRNA_6470 0.49 1.1