Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6442

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803025 to 805267 14809 mRNA_6442: 14810 - Hypothetical Protein, at 805308 to 806483 14810 mRNA_6443: 14811 - K10427 DCTN5 dynactin 5, at 806898 to 807775 14811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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804,328 - 14809 mRNA_6441 0.58 0.7
804,424 + 14809 mRNA_6441 0.62 -0.3
804,711 + 14809 mRNA_6441 0.75 0.0
804,715 + 14809 mRNA_6441 0.75 -0.8
805,114 - -1.4
805,131 + -0.1
805,151 - -2.4
805,182 + -1.2
805,306 + 0.2
805,315 + 0.1
805,328 + 0.1
805,353 + 1.2
805,447 - 14810 mRNA_6442 0.12 -0.9
805,465 + 14810 mRNA_6442 0.13 0.5
805,469 + 14810 mRNA_6442 0.14 0.4
805,488 - 14810 mRNA_6442 0.15 1.6
805,491 + 14810 mRNA_6442 0.16 -0.1
805,503 + 14810 mRNA_6442 0.17 -0.3
805,619 + 14810 mRNA_6442 0.26 0.5
805,745 - 14810 mRNA_6442 0.37 0.9
805,757 - 14810 mRNA_6442 0.38 0.5
805,766 + 14810 mRNA_6442 0.39 2.3
805,771 + 14810 mRNA_6442 0.39 -0.4
805,960 + 14810 mRNA_6442 0.55 0.8
805,990 + 14810 mRNA_6442 0.58 -1.4
806,061 + 14810 mRNA_6442 0.64 0.9
806,130 - 14810 mRNA_6442 0.70 0.5
806,281 + 14810 mRNA_6442 0.83 -0.5
806,515 + -0.1
806,651 - 0.2
806,658 + 1.3
806,669 + 0.3
806,771 + -1.3
806,804 - 1.0
807,360 - 14811 mRNA_6443 0.53 2.2