Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6433

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6432: 14800 - K18203 LCMT1 [phosphatase 2A protein]-leucine-carboxy methyltransferase, at 788062 to 789443 14800 mRNA_6433: 14801 - K12180 COPS7, CSN7 COP9 signalosome complex subunit 7, at 789986 to 791469 14801 mRNA_6434: 14802 - K01904 4CL 4-coumarate--CoA ligase, at 791667 to 793929 14802

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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789,030 + 14800 mRNA_6432 0.70 -0.4
789,338 - 0.6
789,352 + -0.2
789,481 - 0.5
789,483 - 1.2
789,528 + -1.2
789,596 - 0.7
789,761 + 0.4
789,766 - -2.6
789,766 - 0.4
789,766 - 0.4
789,769 + -0.1
789,773 + 0.0
789,774 - -1.0
789,786 + 0.6
789,786 + -1.0
789,897 - 0.7
789,914 - -0.9
789,915 + 1.1
789,935 + 0.1
789,942 + -0.7
789,943 + 1.5
789,954 + 2.3
790,050 - -0.4
790,087 + -1.3
790,246 + 14801 mRNA_6433 0.18 1.4
790,856 + 14801 mRNA_6433 0.59 -0.6
791,104 - 14801 mRNA_6433 0.75 -1.6
791,109 + 14801 mRNA_6433 0.76 -0.4
791,113 - 14801 mRNA_6433 0.76 0.9
791,399 + -0.1
791,425 + 0.5
791,592 + -0.3
791,603 - -0.9
791,610 - -0.5
791,611 + 0.4
791,617 + -1.3
791,627 + -0.7
791,630 - 0.5
791,757 + -2.0
791,759 - -0.3
791,883 + -0.4
791,901 + 14802 mRNA_6434 0.10 -0.1
792,046 - 14802 mRNA_6434 0.17 2.8
792,152 + 14802 mRNA_6434 0.21 1.0
792,186 - 14802 mRNA_6434 0.23 -1.4
792,334 + 14802 mRNA_6434 0.29 0.8
792,355 - 14802 mRNA_6434 0.30 0.5
792,362 + 14802 mRNA_6434 0.31 -1.5