Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6388

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6387: 14755 - Hypothetical Protein, at 692168 to 693043 14755 mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693931 to 695622 14756 mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695999 to 699737 14757

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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692,980 - -0.6
693,174 + 1.7
693,265 - 1.1
693,410 - 0.0
693,412 + -0.8
693,436 + -0.7
693,440 - -0.7
693,443 - 1.7
693,569 + -0.3
693,597 + 1.2
693,735 - -1.0
693,748 + 0.3
693,872 + -1.9
693,874 - -0.4
693,885 + 0.7
693,890 + 0.0
693,891 - -0.3
694,208 + 14756 mRNA_6388 0.16 0.2
694,321 + 14756 mRNA_6388 0.23 0.1
694,494 + 14756 mRNA_6388 0.33 0.0
694,764 - 14756 mRNA_6388 0.49 -1.7
694,934 + 14756 mRNA_6388 0.59 -0.7
694,937 + 14756 mRNA_6388 0.59 -0.6
695,746 - -0.5
695,808 - -1.1
695,910 + 0.2
695,918 - -1.5
696,012 - -0.1
696,369 - 2.1