Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6381

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678421 to 679401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679604 to 681699 14749 mRNA_6382: 14750 - Hypothetical Protein, at 682281 to 684206 14750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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678,638 - 14748 mRNA_6380 0.22 -1.9
678,649 - 14748 mRNA_6380 0.23 -0.8
678,675 - 14748 mRNA_6380 0.26 -0.6
678,955 + 14748 mRNA_6380 0.54 -0.4
679,249 + 14748 mRNA_6380 0.84 0.6
679,370 - 0.2
679,439 + -1.9
679,527 - 0.4
679,572 - -1.0
679,980 + 14749 mRNA_6381 0.18 -0.9
680,227 - 14749 mRNA_6381 0.30 0.9
680,228 + 14749 mRNA_6381 0.30 0.7
680,247 + 14749 mRNA_6381 0.31 0.0
680,531 - 14749 mRNA_6381 0.44 -1.4
680,532 + 14749 mRNA_6381 0.44 -0.8
680,585 - 14749 mRNA_6381 0.47 1.1
680,688 - 14749 mRNA_6381 0.52 0.4
680,707 + 14749 mRNA_6381 0.53 -1.9
681,255 + 14749 mRNA_6381 0.79 -0.7
681,671 + -1.6
681,682 - -0.1
681,702 - -0.3
681,727 + -0.5
681,736 + 1.4
681,760 + -1.2
681,858 - -2.8
681,873 - -1.3
681,874 + -0.1
681,881 + -0.7
681,890 - 1.9
681,892 - -0.2
681,896 - -1.7
681,903 + -1.6
681,905 + 0.1
681,927 - 0.3
681,939 - 0.9
682,015 - 0.7
682,021 + 0.0
682,093 + -0.7
682,093 - -0.7
682,096 + -0.9
682,112 + -0.6
682,365 - 4.3
682,650 - 14750 mRNA_6382 0.19 0.8