Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6376

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743 mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669168 to 671272 14744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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668,192 + 14743 mRNA_6375 0.72 -0.1
668,198 - 14743 mRNA_6375 0.72 2.8
668,634 - 0.4
668,752 + -0.7
668,789 - 0.8
668,869 - -0.4
668,918 + -1.7
668,922 - -0.3
668,930 + -0.0
668,936 - -0.6
668,965 + 0.4
668,967 + -2.2
668,998 - -0.1
669,108 + -0.0
669,110 - -0.6
669,111 - -0.0
669,111 - -0.2
669,116 + -0.4
669,119 - 0.6
669,120 + 0.4
669,124 - -2.8
669,125 - -3.4
669,126 - 0.3
669,133 - 1.8
669,134 + -1.5
669,137 + -1.6
669,146 - 0.1
669,274 + 1.2
669,287 + 1.1
669,295 - -0.3
669,302 - -0.4
669,391 + 14744 mRNA_6376 0.11 1.6
669,564 - 14744 mRNA_6376 0.19 0.2
669,710 - 14744 mRNA_6376 0.26 -0.2
669,899 - 14744 mRNA_6376 0.35 -0.3
670,036 - 14744 mRNA_6376 0.41 0.9
670,166 - 14744 mRNA_6376 0.47 0.8
670,188 + 14744 mRNA_6376 0.48 0.4
670,199 + 14744 mRNA_6376 0.49 0.7
670,608 + 14744 mRNA_6376 0.68 -0.5
670,750 + 14744 mRNA_6376 0.75 -0.1
670,750 - 14744 mRNA_6376 0.75 -0.5
670,906 - 14744 mRNA_6376 0.83 -0.9
671,302 - 0.2
671,378 + 0.4
671,428 - -0.5
671,517 - -0.4
671,526 - -0.8
671,762 - -0.9
671,857 - -0.7
672,064 + 1.0
672,092 - -0.6
672,130 + 1.0