Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6344

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6343: 14711 - K12621 LSM2 U6 snRNA-associated Sm-like protein LSm2, at 590850 to 591445 14711 mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592028 to 595751 14712 mRNA_6345: 14713 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 596038 to 599020 14713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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591,483 - -1.4
591,488 + -0.1
591,492 + -0.2
591,495 - 0.7
591,495 - -2.1
591,522 - -0.3
591,656 + -0.8
591,693 + 0.3
591,817 - -0.3
591,840 + 1.2
592,034 + -1.6
592,179 + 1.3
592,242 + -0.3
592,816 + 14712 mRNA_6344 0.21 3.2
593,545 - 14712 mRNA_6344 0.41 0.4
593,683 + 14712 mRNA_6344 0.44 0.1
593,841 - 14712 mRNA_6344 0.49 -0.6
593,849 + 14712 mRNA_6344 0.49 0.0
594,254 - 14712 mRNA_6344 0.60 -1.3
594,286 - 14712 mRNA_6344 0.61 -0.7
594,411 + 14712 mRNA_6344 0.64 -0.8
594,552 - 14712 mRNA_6344 0.68 0.3
594,879 - 14712 mRNA_6344 0.77 -1.8
595,297 + 14712 mRNA_6344 0.88 0.5
595,444 - 0.3
595,604 + -2.0
595,605 + -1.0
595,623 + -1.3
596,135 + 0.8