Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6292

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6291: 14659 - K12182 HGS, HRS, VPS27 hepatocyte growth factor-regulated tyrosine kinase substrate, at 453109 to 455308 14659 mRNA_6292: 14660 - K15082 RAD7 DNA repair protein RAD7, at 455485 to 457859 14660 mRNA_6293: 14661 - K18467 VPS29 vacuolar protein sorting-associated protein 29, at 458266 to 459644 14661

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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454,784 + 14659 mRNA_6291 0.76 1.9
455,067 + 14659 mRNA_6291 0.89 0.1
455,096 + -0.7
455,184 - -1.0
455,207 - -2.0
455,210 + -2.2
455,213 + -0.0
455,227 + 0.2
455,337 - 0.2
455,400 - 1.1
455,453 + -0.5
455,457 - 0.3
455,459 - -0.3
455,466 + -0.2
455,473 - -1.0
455,571 + 0.5
455,582 - -0.2
455,591 + 0.4
455,591 - -0.6
455,608 - -0.3
455,743 + 14660 mRNA_6292 0.11 -0.5
455,769 - 14660 mRNA_6292 0.12 -1.0
455,895 - 14660 mRNA_6292 0.17 0.1
456,063 - 14660 mRNA_6292 0.24 0.5
456,374 + 14660 mRNA_6292 0.37 -0.3
456,774 + 14660 mRNA_6292 0.54 -0.6
456,891 - 14660 mRNA_6292 0.59 -1.9
456,937 - 14660 mRNA_6292 0.61 -0.5
457,057 - 14660 mRNA_6292 0.66 1.5
457,251 - 14660 mRNA_6292 0.74 -0.6
457,897 - -0.4
458,072 - -0.1
458,211 + 0.8
458,347 - -0.3
458,762 - 14661 mRNA_6293 0.36 -1.8
458,771 - 14661 mRNA_6293 0.37 1.2