Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6258

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368702 to 371060 14625 mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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371,002 - 0.4
371,210 - 0.0
371,293 + 1.4
372,120 - -0.1
372,178 + 14626 mRNA_6258 0.11 -2.0
372,886 - 14626 mRNA_6258 0.38 0.2
373,064 + 14626 mRNA_6258 0.45 1.2
373,185 + 14626 mRNA_6258 0.50 -0.0
373,226 - 14626 mRNA_6258 0.51 0.1
373,304 + 14626 mRNA_6258 0.54 0.2
373,349 + 14626 mRNA_6258 0.56 1.6
373,756 - 14626 mRNA_6258 0.72 0.1
373,804 + 14626 mRNA_6258 0.74 -0.1
374,321 + 1.9
374,481 + -0.0
374,488 + -0.4
374,512 + -0.6
374,627 + -1.8
374,628 + -1.0
374,639 + 0.2
374,639 - 1.2
374,647 + 0.9
374,648 - -1.0
374,650 - 0.0
374,668 - 1.3
374,671 - -0.4
374,676 + 0.1
374,676 + 0.2
374,720 + 1.5
374,723 + -1.7
374,724 + -0.4
374,732 + 0.1
374,743 + -0.1
374,835 - -0.1
374,838 + -0.5
374,847 - 1.0
374,861 + -1.0
374,861 + -0.2
374,882 + 0.7
374,892 + -2.1
374,901 - -0.6
374,901 + 0.4
374,911 - 0.3
374,919 + -1.0
374,925 - 1.4
374,925 - -1.6
374,928 + 1.8
374,930 + -0.5
374,932 + -1.1
374,932 + -0.5
374,934 - -0.6
374,934 - -0.1
374,935 + 0.8
374,937 + -0.6
374,937 + -1.0
374,943 + -1.3
374,946 - 0.1
374,947 + -0.8
374,948 + -1.2
374,948 - 1.8
374,951 + 0.8
374,952 + -2.4
374,954 + 0.3
374,957 - -1.8
375,055 + -0.3
375,125 + -2.4
375,393 - 14627 mRNA_6259 0.19 0.7
375,395 - 14627 mRNA_6259 0.19 -0.5
375,429 + 14627 mRNA_6259 0.21 -0.3