Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6236

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6235: 14603 - K17279 REEP5_6 receptor expression-enhancing protein 5/6, at 318135 to 318876 14603 mRNA_6236: 14604 - Hypothetical Protein, at 319520 to 321215 14604 mRNA_6237: 14605 - K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6, at 321480 to 324944 14605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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318,737 + 14603 mRNA_6235 0.81 -0.1
319,109 - 2.3
319,263 - -1.7
319,271 + -0.4
319,272 + -0.2
319,278 + -1.1
319,281 + -2.1
319,285 - -0.1
319,289 - 0.7
319,292 + 1.1
319,294 - 1.6
319,302 + -0.7
319,883 - 14604 mRNA_6236 0.21 0.8
320,026 + 14604 mRNA_6236 0.30 1.0
320,044 - 14604 mRNA_6236 0.31 -0.0
320,048 - 14604 mRNA_6236 0.31 -1.5
320,051 + 14604 mRNA_6236 0.31 -0.4
320,333 + 14604 mRNA_6236 0.48 1.8
320,364 + 14604 mRNA_6236 0.50 0.2
320,495 - 14604 mRNA_6236 0.57 -0.9
320,525 - 14604 mRNA_6236 0.59 -0.0
320,626 + 14604 mRNA_6236 0.65 1.1
320,765 - 14604 mRNA_6236 0.73 -0.8
320,924 + 14604 mRNA_6236 0.83 0.4
321,070 + 0.8
321,071 + -0.3
321,076 - -0.3
321,214 + -0.2
321,217 + 1.2
321,230 + -1.5
321,239 - -1.5
321,385 + 0.1
321,513 - -0.2
321,655 - -1.0
321,976 - 14605 mRNA_6237 0.14 1.1
322,115 + 14605 mRNA_6237 0.18 0.2
322,147 + 14605 mRNA_6237 0.19 0.5