Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6183

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196153 to 199901 14550 mRNA_6183: 14551 - Hypothetical Protein, at 200560 to 201520 14551 mRNA_6184: 14552 - Hypothetical Protein, at 202342 to 203677 14552

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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199,673 + 0.7
199,684 + 3.2
199,806 - 4.8
199,819 - 4.0
199,820 - 2.4
199,856 + 4.0
199,937 - 3.4
199,956 + 3.2
199,971 + 2.2
199,987 + 3.9
199,998 + 3.0
200,004 + 1.6
200,104 - 4.0
200,110 - 1.8
200,115 - 0.5
200,119 - 0.4
200,121 - -0.2
200,121 - 1.1
200,122 + -0.2
200,131 - -0.9
200,139 + 1.3
200,140 - 2.3
200,141 + -0.0
200,147 - 0.9
200,151 + 1.3
200,164 + 3.1
200,171 - 0.8
200,245 + 1.2
200,249 - 0.1
200,259 - 0.8
200,266 - -3.0
200,267 + 0.6
200,269 - -1.9
200,272 - -1.5
200,274 - 1.7
200,274 + 0.7
200,276 - -0.6
200,276 - 0.7
200,279 + 0.2
200,281 + -0.1
200,290 + -0.9
200,292 - -1.5
200,292 + 1.0
200,294 - 1.0
200,294 + -1.3
200,294 + 0.1
200,296 + -0.2
200,298 + 0.6
200,301 + -1.9
200,304 + 1.1
200,307 + 1.4
200,310 + 0.5
200,315 + 0.8
200,318 + 0.3
200,340 + -1.2
200,342 + 1.1
200,377 + -0.9
200,389 - 0.0
200,390 + -0.9
200,393 - -1.1
200,403 - 1.5
200,406 + 4.1
200,415 + 0.2
200,498 - 0.4
200,549 + -0.2
200,555 + 3.1
200,558 - 0.9
200,560 - 0.6
200,563 - 1.9
200,570 - -0.3
200,574 - -0.7
200,574 - 1.1
200,589 + 0.1
200,590 - 0.5
200,598 + -0.0
200,599 - -1.0
200,601 + -0.5
200,602 - 3.4
200,602 + 0.9
200,603 - 0.4
200,603 - 0.6
200,604 - 0.6
200,609 - -0.7
200,616 - 0.1
200,619 + 0.6
200,622 + -0.6
200,626 - 0.6
200,629 + -0.7
200,632 + 2.5
200,633 + 0.3
200,634 - -0.2
200,638 + -0.9
200,639 + -1.2
200,641 - 0.9
200,643 + -0.5
200,643 + -0.4
200,644 + 0.4
200,652 + -0.7
200,737 + 14551 mRNA_6183 0.18 0.1
200,755 - 14551 mRNA_6183 0.20 -0.2
200,757 + 14551 mRNA_6183 0.20 -0.2
200,760 - 14551 mRNA_6183 0.21 -1.3
200,761 + 14551 mRNA_6183 0.21 -1.3
200,761 + 14551 mRNA_6183 0.21 0.2
200,772 + 14551 mRNA_6183 0.22 -0.1
200,781 + 14551 mRNA_6183 0.23 -0.6
200,781 - 14551 mRNA_6183 0.23 -0.1
200,786 - 14551 mRNA_6183 0.24 0.1
200,788 + 14551 mRNA_6183 0.24 3.0
200,798 - 14551 mRNA_6183 0.25 1.1
200,799 - 14551 mRNA_6183 0.25 -2.3
200,799 + 14551 mRNA_6183 0.25 0.6
200,800 + 14551 mRNA_6183 0.25 0.3
200,804 - 14551 mRNA_6183 0.25 -0.3
200,832 + 14551 mRNA_6183 0.28 -0.5
200,943 - 14551 mRNA_6183 0.40 0.2
200,958 + 14551 mRNA_6183 0.41 -0.2
200,986 + 14551 mRNA_6183 0.44 -1.6
201,033 + 14551 mRNA_6183 0.49 2.0
201,036 + 14551 mRNA_6183 0.50 0.5
201,042 + 14551 mRNA_6183 0.50 1.7
201,048 - 14551 mRNA_6183 0.51 -0.6
201,053 + 14551 mRNA_6183 0.51 -1.1
201,063 - 14551 mRNA_6183 0.52 -0.7
201,068 - 14551 mRNA_6183 0.53 0.8
201,070 + 14551 mRNA_6183 0.53 2.7
201,070 - 14551 mRNA_6183 0.53 -0.6
201,077 - 14551 mRNA_6183 0.54 -2.3
201,082 - 14551 mRNA_6183 0.54 0.3
201,086 + 14551 mRNA_6183 0.55 0.6
201,088 - 14551 mRNA_6183 0.55 0.7
201,094 + 14551 mRNA_6183 0.56 -0.8
201,095 - 14551 mRNA_6183 0.56 1.5
201,096 + 14551 mRNA_6183 0.56 0.2
201,110 - 14551 mRNA_6183 0.57 0.1
201,128 - 14551 mRNA_6183 0.59 -1.1
201,139 - 14551 mRNA_6183 0.60 -0.4
201,148 - 14551 mRNA_6183 0.61 -0.2
201,157 + 14551 mRNA_6183 0.62 0.7
201,159 - 14551 mRNA_6183 0.62 -0.4
201,161 - 14551 mRNA_6183 0.63 -2.0
201,171 + 14551 mRNA_6183 0.64 -2.3
201,183 + 14551 mRNA_6183 0.65 0.1
201,188 - 14551 mRNA_6183 0.65 1.5
201,189 + 14551 mRNA_6183 0.65 0.6
201,192 - 14551 mRNA_6183 0.66 0.1
201,200 - 14551 mRNA_6183 0.67 -1.3
201,209 + 14551 mRNA_6183 0.68 1.1
201,209 + 14551 mRNA_6183 0.68 -0.9
201,212 + 14551 mRNA_6183 0.68 -1.6
201,213 + 14551 mRNA_6183 0.68 -0.8
201,219 + 14551 mRNA_6183 0.69 0.6
201,228 + 14551 mRNA_6183 0.70 0.7
201,235 - 14551 mRNA_6183 0.70 -0.3
201,243 + 14551 mRNA_6183 0.71 -1.0
201,264 + 14551 mRNA_6183 0.73 -1.0
201,292 - 14551 mRNA_6183 0.76 -1.1
201,345 + 14551 mRNA_6183 0.82 -0.7
201,366 - 14551 mRNA_6183 0.84 0.7
201,399 + 14551 mRNA_6183 0.87 1.1
201,422 + 14551 mRNA_6183 0.90 0.6
201,431 + 0.9
201,448 - 0.2
201,457 - 0.9
201,468 - -0.4
201,469 - 0.1
201,471 - -0.1
201,473 - 0.4
201,479 - 1.0
201,482 + -0.4
201,492 + 0.3
201,493 - 0.4
201,493 + 0.7
201,635 - 2.2
201,648 + 2.3
201,649 - -2.0
201,663 - 1.0
201,682 - 0.6
201,804 + -1.6
201,931 + 0.3
201,961 - -0.7
202,094 + -0.9
202,103 + -0.7