Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6182

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192986 to 195356 14549 mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196153 to 199901 14550 mRNA_6183: 14551 - Hypothetical Protein, at 200560 to 201520 14551

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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195,417 + -0.3
195,565 - 3.5
195,600 - 0.6
195,624 + 3.1
195,736 - -0.8
195,738 + 1.0
195,742 + 2.7
195,744 + 1.4
195,746 + -0.4
195,756 + -0.4
195,757 - 0.0
195,757 + -2.1
195,768 - 0.4
195,773 + -1.2
195,780 + 0.3
195,908 - -0.7
196,044 - 1.1
196,055 - -1.5
196,056 + 2.0
196,113 + 1.0
196,151 + 0.2
196,498 + 1.6
196,613 + 14550 mRNA_6182 0.12 1.1
196,805 - 14550 mRNA_6182 0.17 3.4
196,985 + 14550 mRNA_6182 0.22 0.5
197,099 + 14550 mRNA_6182 0.25 3.9
197,495 - 14550 mRNA_6182 0.36 2.3
197,639 - 14550 mRNA_6182 0.40 2.6
197,827 - 14550 mRNA_6182 0.45 2.3
198,001 + 14550 mRNA_6182 0.49 -0.1
198,138 + 14550 mRNA_6182 0.53 1.3
198,293 - 14550 mRNA_6182 0.57 2.2
198,400 - 14550 mRNA_6182 0.60 2.4
198,426 + 14550 mRNA_6182 0.61 -0.1
198,658 - 14550 mRNA_6182 0.67 4.4
198,799 - 14550 mRNA_6182 0.71 5.5
199,673 + 0.7
199,684 + 3.2
199,806 - 4.8
199,819 - 4.0
199,820 - 2.4
199,856 + 4.0
199,937 - 3.4
199,956 + 3.2
199,971 + 2.2
199,987 + 3.9
199,998 + 3.0
200,004 + 1.6
200,104 - 4.0
200,110 - 1.8
200,115 - 0.5
200,119 - 0.4
200,121 - -0.2
200,121 - 1.1
200,122 + -0.2
200,131 - -0.9
200,139 + 1.3
200,140 - 2.3
200,141 + -0.0
200,147 - 0.9
200,151 + 1.3
200,164 + 3.1
200,171 - 0.8
200,245 + 1.2
200,249 - 0.1
200,259 - 0.8
200,266 - -3.0
200,267 + 0.6
200,269 - -1.9
200,272 - -1.5
200,274 - 1.7
200,274 + 0.7
200,276 - -0.6
200,276 - 0.7
200,279 + 0.2
200,281 + -0.1
200,290 + -0.9
200,292 - -1.5
200,292 + 1.0
200,294 - 1.0
200,294 + -1.3
200,294 + 0.1
200,296 + -0.2
200,298 + 0.6
200,301 + -1.9
200,304 + 1.1
200,307 + 1.4
200,310 + 0.5
200,315 + 0.8
200,318 + 0.3
200,340 + -1.2
200,342 + 1.1
200,377 + -0.9
200,389 - 0.0
200,390 + -0.9
200,393 - -1.1
200,403 - 1.5
200,406 + 4.1
200,415 + 0.2
200,498 - 0.4
200,549 + -0.2
200,555 + 3.1
200,558 - 0.9
200,560 - 0.6
200,563 - 1.9
200,570 - -0.3
200,574 - -0.7
200,574 - 1.1
200,589 + 0.1
200,590 - 0.5
200,598 + -0.0
200,599 - -1.0
200,601 + -0.5
200,602 - 3.4
200,602 + 0.9
200,603 - 0.4
200,603 - 0.6
200,604 - 0.6
200,609 - -0.7
200,616 - 0.1
200,619 + 0.6
200,622 + -0.6
200,626 - 0.6
200,629 + -0.7
200,632 + 2.5
200,633 + 0.3
200,634 - -0.2
200,638 + -0.9
200,639 + -1.2
200,641 - 0.9
200,643 + -0.5
200,643 + -0.4
200,644 + 0.4
200,652 + -0.7
200,737 + 14551 mRNA_6183 0.18 0.1
200,755 - 14551 mRNA_6183 0.20 -0.2
200,757 + 14551 mRNA_6183 0.20 -0.2
200,760 - 14551 mRNA_6183 0.21 -1.3
200,761 + 14551 mRNA_6183 0.21 -1.3
200,761 + 14551 mRNA_6183 0.21 0.2
200,772 + 14551 mRNA_6183 0.22 -0.1
200,781 + 14551 mRNA_6183 0.23 -0.6
200,781 - 14551 mRNA_6183 0.23 -0.1
200,786 - 14551 mRNA_6183 0.24 0.1
200,788 + 14551 mRNA_6183 0.24 3.0
200,798 - 14551 mRNA_6183 0.25 1.1
200,799 - 14551 mRNA_6183 0.25 -2.3
200,799 + 14551 mRNA_6183 0.25 0.6
200,800 + 14551 mRNA_6183 0.25 0.3
200,804 - 14551 mRNA_6183 0.25 -0.3
200,832 + 14551 mRNA_6183 0.28 -0.5