Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6143

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6142: 14510 - Hypothetical Protein, at 107739 to 108173 14510 mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108337 to 111111 14511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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107,346 - 1.4
107,359 - -1.4
107,363 + 3.2
107,371 - -0.4
107,372 - 0.2
107,375 - 1.9
107,376 + -0.4
107,390 + 0.8
107,395 + 0.1
107,488 - 0.1
107,507 + -2.2
107,523 - -0.4
107,535 - 0.3
107,535 - -0.1
107,536 + 2.5
107,542 + 0.9
107,559 + -0.2
107,574 - -1.7
107,674 - 0.1
107,691 - 0.5
107,819 - 14510 mRNA_6142 0.18 2.9
107,981 + 14510 mRNA_6142 0.56 0.3
108,234 - -0.4
108,409 - 0.0
108,537 - -0.4
109,006 + 14511 mRNA_6143 0.24 -0.1
109,083 + 14511 mRNA_6143 0.27 -0.3
109,333 + 14511 mRNA_6143 0.36 1.0
109,604 - 14511 mRNA_6143 0.46 -1.4
109,880 - 14511 mRNA_6143 0.56 -0.7
110,022 - 14511 mRNA_6143 0.61 0.5
110,155 + 14511 mRNA_6143 0.66 -0.2
110,738 + 14511 mRNA_6143 0.87 0.7
111,117 - 0.5
111,722 - -0.5
111,730 + -0.6
111,863 - -0.0
111,863 - -3.5
111,870 - -0.2
111,872 - 0.1
111,883 - 0.2
111,890 + -1.0
111,923 + -0.4
111,932 - 2.2
111,981 + -0.3
111,983 - 0.9
111,983 - -0.7
111,984 - 1.7
111,991 - -0.6
111,992 + 1.1
111,992 + -1.7
112,006 - -0.2
112,006 + -1.5
112,009 + 1.6
112,011 + -3.0
112,011 + 0.0
112,015 + 0.8
112,016 - -0.3
112,020 + -0.7