Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5996

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5995: 14363 - K14539 LSG1 large subunit GTPase 1, at 1407863 to 1410284 14363 mRNA_5996: 14364 - BLAST ran GTPase activating protein 1 [Capsaspora owcza..., at 1410820 to 1412089 14364 mRNA_5997: 14365 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1412411 to 1414490 14365

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,410,312 + 0.9
1,410,315 + 0.1
1,410,318 + 0.5
1,410,355 + -0.3
1,410,475 - 1.6
1,410,577 + 1.8
1,410,618 - -0.6
1,410,633 + -0.4
1,410,792 - -0.3
1,410,936 + 0.8
1,410,937 - 1.0
1,410,937 - -0.7
1,410,950 + 14364 mRNA_5996 0.10 -2.6
1,410,953 - 14364 mRNA_5996 0.10 -1.5
1,410,966 + 14364 mRNA_5996 0.11 -0.6
1,411,400 - 14364 mRNA_5996 0.46 -2.2
1,411,406 - 14364 mRNA_5996 0.46 -0.3
1,411,548 - 14364 mRNA_5996 0.57 -1.9
1,411,557 + 14364 mRNA_5996 0.58 -0.4
1,411,614 + 14364 mRNA_5996 0.63 0.3
1,411,622 - 14364 mRNA_5996 0.63 -2.3
1,411,805 + 14364 mRNA_5996 0.78 -1.9
1,412,059 - -1.1
1,412,093 + 0.5
1,412,099 + 0.4
1,412,867 - 14365 mRNA_5997 0.22 1.0
1,412,937 + 14365 mRNA_5997 0.25 2.0
1,412,969 - 14365 mRNA_5997 0.27 0.2
1,412,983 - 14365 mRNA_5997 0.28 0.1
1,412,998 + 14365 mRNA_5997 0.28 0.6
1,413,017 + 14365 mRNA_5997 0.29 -0.5