Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5958

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1329239 to 1331004 14325 mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1331460 to 1334052 14326 mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1334549 to 1337487 14327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,330,493 + 14325 mRNA_5957 0.71 -0.8
1,330,522 + 14325 mRNA_5957 0.73 2.0
1,330,655 - 14325 mRNA_5957 0.80 0.0
1,331,405 + -0.2
1,331,411 + -0.7
1,331,780 + 14326 mRNA_5958 0.12 -1.2
1,331,965 - 14326 mRNA_5958 0.19 0.0
1,332,084 + 14326 mRNA_5958 0.24 1.0
1,332,419 - 14326 mRNA_5958 0.37 0.2
1,332,696 - 14326 mRNA_5958 0.48 -1.5
1,333,256 + 14326 mRNA_5958 0.69 -0.1
1,333,383 + 14326 mRNA_5958 0.74 -0.9
1,333,414 + 14326 mRNA_5958 0.75 0.2
1,333,627 - 14326 mRNA_5958 0.84 2.2
1,333,690 + 14326 mRNA_5958 0.86 -1.0
1,333,698 + 14326 mRNA_5958 0.86 0.5
1,333,728 - 14326 mRNA_5958 0.87 0.3
1,333,735 - 14326 mRNA_5958 0.88 0.2
1,333,825 + -0.8
1,333,841 + -0.1
1,333,874 + 1.2
1,333,876 - 2.4
1,333,880 - 0.4
1,333,889 + -0.9
1,333,934 + 0.2
1,333,939 - 0.5
1,333,949 + 1.7
1,334,032 - 0.8
1,334,042 - 0.0
1,334,043 - 1.2
1,334,045 - 0.8
1,334,082 - 0.3
1,334,083 + -0.2
1,334,125 + 0.9
1,334,152 - 0.4
1,334,206 - 2.2
1,334,295 - 0.0
1,334,319 + -0.2
1,334,323 + 0.3
1,334,345 - 1.9
1,334,364 + -1.2
1,334,365 + -0.3
1,334,387 - -0.2
1,334,451 - 0.7
1,334,452 - -0.1
1,334,453 + -1.1
1,334,475 + 0.6
1,334,488 + -0.4
1,334,502 - -0.3
1,334,527 + -1.3
1,334,529 + -0.1
1,334,811 + -0.8
1,334,818 + 1.3
1,334,921 + 14327 mRNA_5959 0.13 1.4
1,334,991 - 14327 mRNA_5959 0.15 -0.9