Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5956

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5955: 14323 - K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, at 1319797 to 1323881 14323 mRNA_5956: 14324 - KOG2238 Uncharacterized conserved protein TEX2, contains PH domain, at 1324543 to 1328402 14324 mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1329239 to 1331004 14325

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,324,213 + -0.4
1,324,242 + 2.5
1,324,354 + 0.1
1,324,369 + -2.4
1,324,370 - -0.6
1,324,378 + -0.3
1,324,390 + -1.7
1,324,813 - 3.7
1,325,521 + 14324 mRNA_5956 0.25 1.5
1,325,905 + 14324 mRNA_5956 0.35 -1.6
1,326,318 - 14324 mRNA_5956 0.46 -0.1
1,326,440 + 14324 mRNA_5956 0.49 0.7
1,326,468 - 14324 mRNA_5956 0.50 1.0
1,326,471 - 14324 mRNA_5956 0.50 0.2
1,326,972 - 14324 mRNA_5956 0.63 -0.7
1,326,975 + 14324 mRNA_5956 0.63 1.2
1,327,099 - 14324 mRNA_5956 0.66 0.5
1,327,213 - 14324 mRNA_5956 0.69 -0.8
1,327,495 - 14324 mRNA_5956 0.76 1.6
1,327,528 + 14324 mRNA_5956 0.77 0.2
1,327,563 - 14324 mRNA_5956 0.78 -0.5
1,327,636 + 14324 mRNA_5956 0.80 -1.4
1,327,844 + 14324 mRNA_5956 0.86 -0.4
1,328,070 - 1.7
1,328,128 - 0.3
1,328,198 - 0.8
1,328,222 - -1.5
1,328,366 - 0.3
1,328,370 - 1.1
1,328,397 + -0.6
1,328,522 + -0.0
1,328,535 + -0.2
1,328,541 + 0.2
1,328,654 - 1.6
1,328,682 - 0.6
1,328,834 - -1.9
1,328,848 + 0.4
1,328,848 - -0.6
1,328,886 + 0.3
1,328,889 - -0.4
1,329,106 + -0.1
1,329,121 - 2.7
1,329,125 + 0.0
1,329,125 + -1.0
1,329,163 + -2.3
1,329,333 + 1.3