Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5879

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1146916 to 1148820 14246 mRNA_5879: 14247 - KOG2624 Triglyceride lipase-cholesterol esterase, at 1149162 to 1152280 14247 mRNA_5880: 14248 - HMMPfam-Transglycosylase SLT domain-PF01464,SUPERFAMILY--SSF53955, at 1152556 to 1154002 14248

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,148,852 + -0.2
1,148,854 + -0.4
1,148,912 + 1.9
1,148,918 - 0.9
1,148,928 - -0.7
1,148,928 + 2.0
1,148,939 + 0.1
1,148,940 - -0.6
1,148,942 + -1.1
1,148,942 + 0.1
1,148,947 - -0.8
1,148,948 - -0.2
1,148,949 - 0.1
1,148,957 + -0.1
1,148,957 - 0.2
1,148,987 + 0.4
1,149,088 - 1.2
1,149,107 - 0.3
1,149,108 + -0.8
1,149,114 - 0.1
1,149,137 - -1.2
1,149,141 - 0.5
1,149,151 - -2.5
1,149,151 - -0.7
1,149,153 - -0.9
1,149,182 - 1.3
1,149,290 - -2.0
1,149,309 + -0.7
1,149,441 + -1.2
1,149,474 + 14247 mRNA_5879 0.10 -0.4
1,149,606 + 14247 mRNA_5879 0.14 -0.2
1,149,701 - 14247 mRNA_5879 0.17 1.6
1,149,720 - 14247 mRNA_5879 0.18 1.4
1,149,891 - 14247 mRNA_5879 0.23 0.8
1,150,309 - 14247 mRNA_5879 0.37 -0.2
1,150,748 + 14247 mRNA_5879 0.51 -0.2
1,150,874 - 14247 mRNA_5879 0.55 -0.5
1,151,635 + 14247 mRNA_5879 0.79 -0.2
1,151,731 + 14247 mRNA_5879 0.82 -0.7
1,152,021 + -1.8
1,152,052 + 1.2
1,152,059 + -0.2
1,152,494 + -0.8
1,152,574 - -0.9
1,152,667 + -1.4
1,152,703 + 14248 mRNA_5880 0.10 1.1
1,152,760 - 14248 mRNA_5880 0.14 1.0
1,152,906 - 14248 mRNA_5880 0.24 -0.5
1,153,025 - 14248 mRNA_5880 0.32 0.5
1,153,049 - 14248 mRNA_5880 0.34 0.4
1,153,056 + 14248 mRNA_5880 0.35 0.0
1,153,149 - 14248 mRNA_5880 0.41 -0.6
1,153,162 - 14248 mRNA_5880 0.42 -1.1
1,153,164 + 14248 mRNA_5880 0.42 0.9
1,153,227 + 14248 mRNA_5880 0.46 -0.9