Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5858

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5857: 14225 - K01875 SARS, serS seryl-tRNA synthetase, at 1099938 to 1101615 14225 mRNA_5858: 14226 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 1102268 to 1103746 14226 mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1104171 to 1104734 14227

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,101,615 + 2.2
1,101,618 - -0.4
1,101,619 + 1.5
1,101,620 + 1.1
1,101,621 - 0.8
1,101,623 - 0.9
1,101,625 + 0.7
1,101,626 - 1.5
1,101,627 - -0.1
1,101,630 + 0.3
1,101,638 + 2.1
1,101,639 - 0.0
1,101,649 + -1.6
1,101,650 - -0.1
1,101,651 - 1.2
1,101,658 + -0.6
1,101,663 + -0.4
1,101,672 + -1.1
1,101,674 + -0.3
1,101,680 + 1.5
1,101,725 - 1.4
1,101,728 + 1.3
1,101,729 + 0.3
1,101,744 - 1.2
1,101,753 - -0.0
1,101,763 - 0.1
1,101,763 - 0.4
1,101,764 - -0.4
1,101,765 - 1.5
1,101,769 + -0.5
1,101,769 + 1.3
1,101,769 + 0.0
1,101,777 + 0.0
1,101,782 + -0.1
1,101,783 - -0.7
1,101,784 - 1.8
1,101,789 - 0.8
1,101,792 + -0.5
1,101,792 + 2.3
1,101,792 + -0.2
1,101,796 - -0.7
1,101,802 + 0.3
1,101,802 + -0.5
1,101,806 - -2.4
1,101,806 - 0.2
1,101,808 + -0.1
1,101,809 + -0.6
1,101,814 - 1.1
1,101,814 - -0.4
1,101,817 + 0.5
1,101,827 + 1.7
1,101,834 - -0.4
1,101,854 + 0.3
1,101,927 - -1.2
1,101,938 + 1.9
1,101,940 + -0.1
1,101,951 + 0.2
1,101,973 + 0.0
1,101,991 - 0.8
1,101,995 - 0.4
1,102,039 - 1.1
1,102,072 - 2.4
1,102,089 + 0.4
1,102,091 + -0.2
1,102,097 + -1.4
1,102,097 - -0.1
1,102,097 - -2.1
1,102,104 - 1.7
1,102,115 - 1.5
1,102,116 + 1.1
1,102,124 + 1.1
1,102,127 + -0.1
1,102,130 - 0.2
1,102,134 - 0.7
1,102,137 - 0.5
1,102,138 - 0.4
1,102,139 + 0.4
1,102,139 + 2.1
1,102,158 - 0.1
1,102,160 - -1.1
1,102,161 + -0.5
1,102,163 + -0.4
1,102,164 - -0.4
1,102,168 - 0.6
1,102,169 + 1.6
1,102,179 - 0.2
1,102,194 + -1.0
1,102,196 + 0.9
1,102,198 - 3.0
1,102,276 - -0.8
1,102,307 - 0.7
1,102,431 - 14226 mRNA_5858 0.11 -0.0
1,102,466 - 14226 mRNA_5858 0.13 0.3
1,102,473 - 14226 mRNA_5858 0.14 -0.2
1,102,495 + 14226 mRNA_5858 0.15 -0.2
1,102,549 - 14226 mRNA_5858 0.19 2.0
1,102,577 - 14226 mRNA_5858 0.21 0.8
1,102,599 - 14226 mRNA_5858 0.22 0.4
1,102,605 - 14226 mRNA_5858 0.23 0.3
1,102,606 + 14226 mRNA_5858 0.23 0.4
1,102,632 + 14226 mRNA_5858 0.25 -0.3
1,102,742 - 14226 mRNA_5858 0.32 -0.4
1,102,743 - 14226 mRNA_5858 0.32 0.1
1,102,771 + 14226 mRNA_5858 0.34 0.7
1,102,772 + 14226 mRNA_5858 0.34 0.6
1,102,811 + 14226 mRNA_5858 0.37 -1.1
1,102,874 - 14226 mRNA_5858 0.41 0.0
1,103,048 + 14226 mRNA_5858 0.53 0.0
1,103,097 + 14226 mRNA_5858 0.56 0.6
1,103,128 + 14226 mRNA_5858 0.58 -0.3
1,103,159 - 14226 mRNA_5858 0.60 0.0
1,103,294 - 14226 mRNA_5858 0.69 -1.4
1,103,297 - 14226 mRNA_5858 0.70 -0.2
1,103,323 + 14226 mRNA_5858 0.71 0.5
1,103,374 + 14226 mRNA_5858 0.75 2.3
1,103,622 + 2.8
1,103,641 - 1.1
1,103,713 - 0.7
1,103,719 - -0.6
1,103,728 + -0.3
1,103,763 + -0.1
1,103,796 + 0.4
1,103,807 - 0.0
1,103,861 - 0.5
1,103,875 - 0.5
1,103,882 + -0.2
1,103,891 + 0.4
1,103,891 + -0.8
1,103,918 + 1.4
1,103,926 + 1.5
1,103,930 + 0.3
1,103,931 + 2.4
1,104,003 - -0.0