Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5777

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920137 to 921765 14144 mRNA_5777: 14145 - Hypothetical Protein, at 921951 to 922623 14145 mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923190 to 924639 14146

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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920,987 - 14144 mRNA_5776 0.52 -0.9
921,239 - 14144 mRNA_5776 0.68 2.4
921,747 - -0.3
921,782 - 0.8
921,917 + 0.5
922,035 + 14145 mRNA_5777 0.12 -0.1
922,192 - 14145 mRNA_5777 0.36 0.4
922,364 + 14145 mRNA_5777 0.61 0.4
922,366 + 14145 mRNA_5777 0.62 -0.5
922,378 - 14145 mRNA_5777 0.63 0.6
922,487 + 14145 mRNA_5777 0.80 -0.3
922,770 - -1.6
922,786 - 1.3
922,787 - -0.9
922,793 + -0.3
922,794 - 0.3
922,802 + -0.9
922,811 + 1.0
922,822 + -0.4
922,985 + -1.9
923,012 + 4.0
923,126 - -1.0
923,139 + 1.5
923,139 + -2.0
923,431 + 14146 mRNA_5778 0.17 2.0