Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5743

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5742: 14110 - BLAST spindle pole body protein [Moesziomyces antarcticus T..., at 827493 to 828317 14110 mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828542 to 833992 14111 mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834713 to 839482 14112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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827,545 + 1.3
827,547 - 0.2
827,547 - 0.0
827,547 - -1.3
827,549 - -1.4
827,585 - 14110 mRNA_5742 0.11 0.2
827,602 - 14110 mRNA_5742 0.13 1.8
827,647 + 14110 mRNA_5742 0.19 -2.1
827,711 - 14110 mRNA_5742 0.26 -1.9
828,569 - -0.6
828,719 + -0.6
828,721 + 0.1
828,894 + 0.0
829,303 + 14111 mRNA_5743 0.14 -1.7
829,335 + 14111 mRNA_5743 0.15 0.6
829,484 - 14111 mRNA_5743 0.17 0.4
829,730 - 14111 mRNA_5743 0.22 -1.0
829,741 + 14111 mRNA_5743 0.22 -1.9
829,775 - 14111 mRNA_5743 0.23 -0.4
829,842 - 14111 mRNA_5743 0.24 -2.0
829,927 + 14111 mRNA_5743 0.25 -0.7
829,934 - 14111 mRNA_5743 0.26 -0.5
830,231 - 14111 mRNA_5743 0.31 1.2
830,237 + 14111 mRNA_5743 0.31 1.9
830,528 + 14111 mRNA_5743 0.36 -0.8
830,990 + 14111 mRNA_5743 0.45 -1.3
831,189 + 14111 mRNA_5743 0.49 -0.1
831,189 - 14111 mRNA_5743 0.49 -0.5
832,112 - 14111 mRNA_5743 0.65 1.2
832,248 - 14111 mRNA_5743 0.68 1.2
832,269 - 14111 mRNA_5743 0.68 -2.0
832,668 - 14111 mRNA_5743 0.76 0.1
833,139 + 14111 mRNA_5743 0.84 -0.5
833,281 + 14111 mRNA_5743 0.87 -0.6
833,854 - -0.1
833,876 - 0.1
833,881 - 1.8
834,001 - 1.2
834,003 - 0.5
834,018 - -0.0
834,025 + -1.3
834,037 - -1.2
834,038 + -0.8
834,052 + 0.1
834,145 - 0.9
834,178 - -1.0
834,179 + 0.5
834,180 - 0.9
834,184 + 0.4
834,184 - 1.6
834,189 + -0.4
834,189 + -0.3
834,189 + 1.8
834,202 - -1.4
834,203 - 1.8
834,207 + -1.5
834,315 - -0.0
834,316 - -0.6
834,325 - 0.6
834,331 + -0.2
834,333 - -1.3
834,335 - -0.2
834,342 - -0.6
834,343 + -0.4
834,343 + -0.3
834,345 + 0.1
834,345 - 1.1
834,348 + 1.1
834,349 - 1.4
834,352 - 0.6
834,354 + 0.8
834,355 - -0.2
834,359 - -0.1
834,362 + -1.4
834,378 + 0.0
834,381 + 0.8
834,384 - 0.0
834,385 - -0.3
834,396 + 0.2
834,405 + 2.0
834,413 - -1.7
834,414 + -0.5
834,426 + 1.6
834,430 + 2.3
834,439 + -1.2
834,500 - -0.3
834,611 - 2.3
834,654 + 0.6
834,655 - 1.6
834,656 + 0.3
834,658 - 0.4
834,665 + -2.3
834,667 - 0.6
834,667 - 1.3
834,676 - -0.2
834,688 + 0.6
834,690 - -0.6