Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5704

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728026 to 730424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731059 to 731970 14073

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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727,144 - -1.1
727,162 + 2.7
727,230 + 0.3
727,259 - 2.2
727,275 - 0.6
727,289 - 0.9
727,295 + 0.4
727,317 - -0.7
727,318 + 0.7
727,319 + 0.7
727,338 + 0.4
727,348 - -2.0
727,349 + 0.0
727,359 + 1.4
727,468 - -0.3
727,473 + 1.3
727,483 - 0.3
727,504 + -0.6
727,518 - 2.7
727,530 + 0.9
727,538 + 1.0
727,608 - 0.4
727,696 - -0.6
727,697 - 0.8
727,728 + 0.2
727,736 + 0.3
727,745 + -0.8
727,749 + -1.4
727,866 - -0.7
727,875 + -1.9
727,891 + -0.2
727,892 - 0.0
727,903 - -0.1
728,037 - -0.2
728,041 + -0.8
728,349 + 14072 mRNA_5704 0.13 -0.2
729,218 + 14072 mRNA_5704 0.50 1.0
729,515 + 14072 mRNA_5704 0.62 -0.6
729,699 - 14072 mRNA_5704 0.70 0.7
729,785 - 14072 mRNA_5704 0.73 -2.3
729,802 + 14072 mRNA_5704 0.74 0.7
729,822 - 14072 mRNA_5704 0.75 1.5
730,270 - 0.0
730,321 - -0.7
730,477 - 1.2
730,570 - 1.8
730,666 - -0.1
730,720 + 0.2
730,732 + 1.7
730,750 + 0.5
730,890 + 0.2
730,902 + 1.1
730,911 - 1.0
731,155 - 14073 mRNA_5705 0.11 2.7
731,181 - 14073 mRNA_5705 0.13 -0.8
731,212 + 14073 mRNA_5705 0.17 1.3