Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5686

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689401 to 690702 14053 mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690842 to 694591 14054 mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694932 to 696791 14055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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690,241 - 14053 mRNA_5685 0.65 0.8
690,722 - 0.0
690,741 + -0.3
690,751 + -0.4
690,765 + 1.5
690,861 + -0.2
690,910 - -0.7
691,052 - -0.0
691,603 + 14054 mRNA_5686 0.20 -2.8
691,614 - 14054 mRNA_5686 0.21 0.8
691,616 - 14054 mRNA_5686 0.21 -0.3
691,639 + 14054 mRNA_5686 0.21 0.7
691,650 - 14054 mRNA_5686 0.22 -1.5
691,650 - 14054 mRNA_5686 0.22 1.5
692,085 - 14054 mRNA_5686 0.33 0.6
692,375 - 14054 mRNA_5686 0.41 2.1
692,541 + 14054 mRNA_5686 0.45 1.3
692,652 + 14054 mRNA_5686 0.48 -0.1
692,789 + 14054 mRNA_5686 0.52 1.5
693,106 + 14054 mRNA_5686 0.60 -1.4
693,242 + 14054 mRNA_5686 0.64 0.4
693,396 + 14054 mRNA_5686 0.68 -0.7
693,682 + 14054 mRNA_5686 0.76 -0.0
693,724 - 14054 mRNA_5686 0.77 0.0
694,123 - 14054 mRNA_5686 0.87 -0.4
694,240 - -0.5
694,518 + 1.1
694,526 - -0.2
694,649 + -0.6
694,672 + 3.3
694,673 + 1.3
694,706 - 2.5
694,706 - 0.6
694,708 - 0.7
694,727 - -0.9
694,743 + -1.4
694,748 - -0.3
695,043 + -0.5
695,160 - 14055 mRNA_5687 0.12 1.8
695,322 - 14055 mRNA_5687 0.21 1.2
695,458 - 14055 mRNA_5687 0.28 0.2