Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5680

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675766 to 676852 14047 mRNA_5680: 14048 - Hypothetical Protein, at 677076 to 678500 14048 mRNA_5681: 14049 - KOG3146 Dolichyl pyrophosphate phosphatase and related acid phosphatases, at 678891 to 679763 14049

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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676,395 + 14047 mRNA_5679 0.58 0.1
676,815 + 1.6
676,819 + -1.5
676,839 + -0.0
676,952 + 0.1
676,960 - -1.8
676,966 + -0.8
676,979 + 1.5
676,979 - 0.7
676,984 - -0.5
676,985 + 0.4
676,991 - -1.8
677,097 + -1.1
677,101 + -0.0
677,125 + 0.0
677,244 - 14048 mRNA_5680 0.12 -0.7
677,416 - 14048 mRNA_5680 0.24 0.6
677,561 - 14048 mRNA_5680 0.34 -0.3
677,860 - 14048 mRNA_5680 0.55 -0.5
677,980 - 14048 mRNA_5680 0.63 1.0
678,121 + 14048 mRNA_5680 0.73 0.8
678,142 + 14048 mRNA_5680 0.75 -0.5
678,256 - 14048 mRNA_5680 0.83 0.3
678,282 - 14048 mRNA_5680 0.85 0.1
678,294 + 14048 mRNA_5680 0.85 0.1
678,423 + 1.6
678,551 - -0.2
678,553 + -1.4
678,554 - 0.4
678,724 + 0.3
678,730 - 1.5
678,759 + 1.9
678,837 - 2.6
678,872 - -2.0