Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5667

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642793 to 648199 14035 mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648393 to 650754 14036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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642,214 + -0.8
642,244 + -1.3
642,354 - 1.8
642,607 + -0.6
642,643 - -0.3
642,654 - -0.8
642,656 - 2.4
642,666 + -0.9
642,674 - -0.3
642,686 - -0.1
642,812 - -0.2
642,822 + -3.9
644,521 + 14035 mRNA_5667 0.32 0.4
644,605 + 14035 mRNA_5667 0.34 1.3
645,754 - 14035 mRNA_5667 0.55 -1.9
646,708 + 14035 mRNA_5667 0.72 1.7
646,810 - 14035 mRNA_5667 0.74 -3.4
647,048 + 14035 mRNA_5667 0.79 -1.9
647,500 + 14035 mRNA_5667 0.87 1.3
647,524 + 14035 mRNA_5667 0.87 -0.1
647,639 + 14035 mRNA_5667 0.90 -0.1
647,807 + -1.0
648,379 + 0.9
648,742 + 14036 mRNA_5668 0.15 0.8
648,868 + 14036 mRNA_5668 0.20 0.7
649,135 + 14036 mRNA_5668 0.31 -0.6
649,147 - 14036 mRNA_5668 0.32 1.0