Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5647

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588479 to 592654 14015 mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592841 to 594405 14016

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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587,808 + 14014 mRNA_5646 0.90 0.5
587,882 - 2.4
587,908 + -1.8
587,931 - -2.2
588,054 + -0.1
588,057 - 1.5
588,057 - 0.2
588,058 + 1.4
588,101 + -0.3
588,106 + -0.2
588,107 + 0.1
588,121 + -0.9
588,213 + 0.6
588,250 + -0.4
588,548 - 2.3
588,661 - -0.3
588,804 - -0.6
588,824 + -2.8
589,984 + 14015 mRNA_5647 0.36 -0.4
590,019 - 14015 mRNA_5647 0.37 1.1
590,536 - 14015 mRNA_5647 0.49 0.1
590,577 - 14015 mRNA_5647 0.50 0.1
590,652 - 14015 mRNA_5647 0.52 -1.4
590,880 - 14015 mRNA_5647 0.57 0.1
591,744 - 14015 mRNA_5647 0.78 0.7
592,210 - 14015 mRNA_5647 0.89 -1.7
592,299 - -0.7
592,319 - -1.0
592,394 - 0.5
592,445 - -1.7
592,549 - -1.4
592,693 - 0.4
592,723 + -0.4
592,771 + 0.3
593,125 + 14016 mRNA_5648 0.18 -2.1
593,637 + 14016 mRNA_5648 0.51 2.5