Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5609

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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501,868 - 1.0
502,016 - -0.1
502,129 - 1.6
502,143 - -1.1
502,152 - 0.3
502,153 - 4.0
502,154 + -0.1
502,157 - -0.4
502,293 - 3.9
502,452 - 0.2
502,473 - 13977 mRNA_5609 0.10 1.5
502,477 + 13977 mRNA_5609 0.11 -0.5
502,477 + 13977 mRNA_5609 0.11 0.9
502,748 + 13977 mRNA_5609 0.22 -0.1
503,040 - 13977 mRNA_5609 0.35 -0.0
503,646 - 13977 mRNA_5609 0.60 0.6
503,891 + 13977 mRNA_5609 0.71 1.2
503,903 + 13977 mRNA_5609 0.71 1.3
504,176 - 13977 mRNA_5609 0.83 -0.3
504,191 - 13977 mRNA_5609 0.83 0.7
504,191 - 13977 mRNA_5609 0.83 1.4
504,222 + 13977 mRNA_5609 0.85 -0.0
504,286 + 13977 mRNA_5609 0.87 0.4
505,095 + 13978 mRNA_5610 0.16 1.6
505,536 + 13978 mRNA_5610 0.32 0.7