Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5569

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5568: 13936 - Hypothetical Protein, at 396764 to 397075 13936 mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397579 to 399010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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396,619 - -0.3
396,781 + 0.3
396,782 + 0.8
396,927 - 13936 mRNA_5568 0.52 -2.0
397,169 - 1.0
397,209 + 1.6
397,220 - 0.0
397,324 - 0.5
397,343 - -1.0
397,346 + -0.5
397,347 + -0.4
397,371 - 0.7
397,465 + -1.9
397,480 - 1.5
397,487 + 0.9
397,496 + 0.2
397,507 - 0.5
397,508 - -0.3
397,510 + -1.0
397,514 - -1.4
397,514 - -0.0
397,524 - -0.0
397,526 - 0.4
397,531 - -2.3
397,533 - -0.9
397,533 - -0.5
397,654 + 0.2
397,659 - -1.2
397,661 - -1.7
397,667 - -0.8
397,669 + -0.7
397,670 + 1.9
397,734 + 13937 mRNA_5569 0.11 0.0
397,786 + 13937 mRNA_5569 0.14 1.0
397,802 - 13937 mRNA_5569 0.16 1.2
397,813 + 13937 mRNA_5569 0.16 1.7
397,814 - 13937 mRNA_5569 0.16 0.4
397,815 - 13937 mRNA_5569 0.16 -0.9
397,815 - 13937 mRNA_5569 0.16 0.4
397,837 - 13937 mRNA_5569 0.18 -0.4
397,837 + 13937 mRNA_5569 0.18 1.1
397,855 - 13937 mRNA_5569 0.19 0.6
397,882 - 13937 mRNA_5569 0.21 1.8
397,979 + 13937 mRNA_5569 0.28 0.6
398,260 - 13937 mRNA_5569 0.48 -1.8
398,269 + 13937 mRNA_5569 0.48 0.7
398,542 - 13937 mRNA_5569 0.67 1.1
398,705 - 13937 mRNA_5569 0.79 -1.0
398,859 - 13937 mRNA_5569 0.89 -0.1
398,872 - -1.3
398,925 + -1.0
399,269 - -1.7
399,278 - 0.5
399,294 + 2.3
399,294 + 0.0
399,338 + -0.2
399,421 - 0.4
399,425 - -0.2
399,432 - -0.0
399,437 - -0.9
399,446 + -0.9
399,457 - -1.3
399,464 - 0.7