Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5488

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213824 to 214622 13855 mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214884 to 216932 13856 mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217387 to 219494 13857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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214,062 - 13855 mRNA_5487 0.30 -0.6
214,102 + 13855 mRNA_5487 0.35 -1.8
214,135 + 13855 mRNA_5487 0.39 1.8
214,201 + 13855 mRNA_5487 0.47 -0.6
214,516 - 13855 mRNA_5487 0.87 0.0
214,836 - -0.1
214,939 + 2.1
215,062 + 0.8
215,284 + 13856 mRNA_5488 0.20 -0.4
215,408 - 13856 mRNA_5488 0.26 0.4
215,534 + 13856 mRNA_5488 0.32 -2.8
215,537 - 13856 mRNA_5488 0.32 0.1
215,995 + 13856 mRNA_5488 0.54 -1.2
216,137 + 13856 mRNA_5488 0.61 -1.7
216,564 - 13856 mRNA_5488 0.82 0.3
216,982 - -1.0
216,997 - -1.6
217,002 + 0.1
217,147 + -1.4
217,150 + -0.1
217,152 - 0.7
217,275 - 1.2
217,298 + -1.2
217,300 + 1.1
217,317 - -1.3
217,613 - 13857 mRNA_5489 0.11 0.1
217,651 + 13857 mRNA_5489 0.13 1.8
217,672 - 13857 mRNA_5489 0.14 -0.5
217,769 + 13857 mRNA_5489 0.18 1.2
217,922 - 13857 mRNA_5489 0.25 -0.8
217,923 + 13857 mRNA_5489 0.25 -1.3